| Parameters | Input values |
|---|---|
| Folder name : | Example data |
| Sequence name : | CDH1 |
| Group : | Low methylated DNA |
| Experiment type : | Direct-BSP |
| Replicate number : | 1 |
| Date of sequencing #1 : | 2022-05-02 |
| Date of sequencing #2 : | 2022-05-02 |
| Date of analysis : | 2022-06-04 18:28 |
| Prefix of output files : | CDH1_Low methylated DNA_1 |
| Reference DNA sequence information | Input values |
|---|---|
| Name | CDH1 |
| Strand used for primer design | Plus strand |
| Length | 341 pb |
| Coordinates on reference genome | chr16:68770940-68771280 |
## CCACCGGCGGGGCTGGGATTCGAACCCAGTGGAATCAGAACCGTGCAGGTCCCATAACCCACCTAGACCCTAGCAACTCCAGGCTAGAGGGTCACCGCGTCTATGCGAGGCCGGGTGGGCGGGCCGTCAGCTCCGCCCTGGGGAGGGGTCCGCGCTGCTGATTGGCTGTGGCCGGCAGGTGAACCCTCAGCCAATCAGCGGTACGGGGGGCGGTGCCTCCGGGGCTCACCTGGCTGCAGCCACGCACCCCCTCTCAGTGGCGTCGGAACTGCAAAGCACCTGTGAGCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCGGCCCGACCCGACCGC
## GCGGTCGGGTCGGGCCGGGCTGGAGCGGGCTGGAGTCTGAACTGACTTCCGCAAGCTCACAGGTGCTTTGCAGTTCCGACGCCACTGAGAGGGGGTGCGTGGCTGCAGCCAGGTGAGCCCCGGAGGCACCGCCCCCCGTACCGCTGATTGGCTGAGGGTTCACCTGCCGGCCACAGCCAATCAGCAGCGCGGACCCCTCCCCAGGGCGGAGCTGACGGCCCGCCCACCCGGCCTCGCATAGACGCGGTGACCCTCTAGCCTGGAGTTGCTAGGGTCTAGGTGGGTTATGGGACCTGCACGGTTCTGATTCCACTGGGTTCGAATCCCAGCCCCGCCGGTGG
| CG number | chr | start | end | C position | G position |
|---|---|---|---|---|---|
| 1 | chr16 | 68770944 | 68770945 | 5 | 6 |
| 2 | chr16 | 68770947 | 68770948 | 8 | 9 |
| 3 | chr16 | 68770960 | 68770961 | 21 | 22 |
| 4 | chr16 | 68770981 | 68770982 | 42 | 43 |
| 5 | chr16 | 68771035 | 68771036 | 96 | 97 |
| 6 | chr16 | 68771037 | 68771038 | 98 | 99 |
| 7 | chr16 | 68771045 | 68771046 | 106 | 107 |
| 8 | chr16 | 68771051 | 68771052 | 112 | 113 |
| 9 | chr16 | 68771059 | 68771060 | 120 | 121 |
| 10 | chr16 | 68771064 | 68771065 | 125 | 126 |
| 11 | chr16 | 68771073 | 68771074 | 134 | 135 |
| 12 | chr16 | 68771090 | 68771091 | 151 | 152 |
| 13 | chr16 | 68771092 | 68771093 | 153 | 154 |
| 14 | chr16 | 68771112 | 68771113 | 173 | 174 |
| 15 | chr16 | 68771138 | 68771139 | 199 | 200 |
| 16 | chr16 | 68771143 | 68771144 | 204 | 205 |
| 17 | chr16 | 68771150 | 68771151 | 211 | 212 |
| 18 | chr16 | 68771159 | 68771160 | 220 | 221 |
| 19 | chr16 | 68771182 | 68771183 | 243 | 244 |
| 20 | chr16 | 68771200 | 68771201 | 261 | 262 |
| 21 | chr16 | 68771203 | 68771204 | 264 | 265 |
| 22 | chr16 | 68771230 | 68771231 | 291 | 292 |
| 23 | chr16 | 68771254 | 68771255 | 315 | 316 |
| 24 | chr16 | 68771264 | 68771265 | 325 | 326 |
| 25 | chr16 | 68771269 | 68771270 | 330 | 331 |
| 26 | chr16 | 68771274 | 68771275 | 335 | 336 |
| 27 | chr16 | 68771278 | 68771279 | 339 | 340 |
| CG number | chr | start | end | C position | G position |
|---|---|---|---|---|---|
| 27 | chr16 | 68771278 | 68771279 | 2 | 3 |
| 26 | chr16 | 68771274 | 68771275 | 6 | 7 |
| 25 | chr16 | 68771269 | 68771270 | 11 | 12 |
| 24 | chr16 | 68771264 | 68771265 | 16 | 17 |
| 23 | chr16 | 68771254 | 68771255 | 26 | 27 |
| 22 | chr16 | 68771230 | 68771231 | 50 | 51 |
| 21 | chr16 | 68771203 | 68771204 | 77 | 78 |
| 20 | chr16 | 68771200 | 68771201 | 80 | 81 |
| 19 | chr16 | 68771182 | 68771183 | 98 | 99 |
| 18 | chr16 | 68771159 | 68771160 | 121 | 122 |
| 17 | chr16 | 68771150 | 68771151 | 130 | 131 |
| 16 | chr16 | 68771143 | 68771144 | 137 | 138 |
| 15 | chr16 | 68771138 | 68771139 | 142 | 143 |
| 14 | chr16 | 68771112 | 68771113 | 168 | 169 |
| 13 | chr16 | 68771092 | 68771093 | 188 | 189 |
| 12 | chr16 | 68771090 | 68771091 | 190 | 191 |
| 11 | chr16 | 68771073 | 68771074 | 207 | 208 |
| 10 | chr16 | 68771064 | 68771065 | 216 | 217 |
| 9 | chr16 | 68771059 | 68771060 | 221 | 222 |
| 8 | chr16 | 68771051 | 68771052 | 229 | 230 |
| 7 | chr16 | 68771045 | 68771046 | 235 | 236 |
| 6 | chr16 | 68771037 | 68771038 | 243 | 244 |
| 5 | chr16 | 68771035 | 68771036 | 245 | 246 |
| 4 | chr16 | 68770981 | 68770982 | 299 | 300 |
| 3 | chr16 | 68770960 | 68770961 | 320 | 321 |
| 2 | chr16 | 68770947 | 68770948 | 333 | 334 |
| 1 | chr16 | 68770944 | 68770945 | 336 | 337 |
Bisulfite converted sequence of the plus strand as indicated as the template strand.
## TTATCGGCGGGGTTGGGATTCGAATTTAGTGGAATTAGAATCGTGTAGGTTTTATAATTTATTTAGATTTTAGTAATTTTAGGTTAGAGGGTTATCGCGTTTATGCGAGGTCGGGTGGGCGGGTCGTTAGTTTCGTTTTGGGGAGGGGTTCGCGTTGTTGATTGGTTGTGGTCGGTAGGTGAATTTTTAGTTAATTAGCGGTACGGGGGGCGGTGTTTTCGGGGTTTATTTGGTTGTAGTTACGTATTTTTTTTTAGTGGCGTCGGAATTGTAAAGTATTTGTGAGTTTGCGGAAGTTAGTTTAGATTTTAGTTCGTTTTAGTTCGGTTCGATTCGATCGT
Reverse complement of the bisulfite converted sequence from the plus strand.
## ACGATCGAATCGAACCGAACTAAAACGAACTAAAATCTAAACTAACTTCCGCAAACTCACAAATACTTTACAATTCCGACGCCACTAAAAAAAAATACGTAACTACAACCAAATAAACCCCGAAAACACCGCCCCCCGTACCGCTAATTAACTAAAAATTCACCTACCGACCACAACCAATCAACAACGCGAACCCCTCCCCAAAACGAAACTAACGACCCGCCCACCCGACCTCGCATAAACGCGATAACCCTCTAACCTAAAATTACTAAAATCTAAATAAATTATAAAACCTACACGATTCTAATTCCACTAAATTCGAATCCCAACCCCGCCGATAA
| Thresholds | Values |
|---|---|
| Minimum length of the trimmed sequence : | 30 bp |
| Minimum Phred quality score : | 30 |
| Minimum ratio of primary peak : | 0.75 |
| Minimum percentage of non-mixed positions : | 75 % |
| Sequencing | Length | Start position | End position | Mean of Phred quality scores | Mean of primary peak ratio | Percentage of non-mixed positions | Trimmed sequence quality |
|---|---|---|---|---|---|---|---|
| #1 | 170 | 30 | 199 | 24.22 | 0.82 | 69.41 | Incorrect |
| #2 | 203 | 7 | 209 | 44.82 | 0.94 | 92.12 | Correct |
Sequence of primary peaks:
Length: 1073 bp
## TCCCCTTCAGGGGTAGTATTTGGTTAAGGGTTTTGAGTATTGTGCGTATTTGTGAGTTTCCTCGACTGTGCCTTCTAAGACGGGAGGTTGCCCATTGTTGGTTGATGTAGTGAACTGCGGGCGCTTGTTCAGCGTCGACCTTATCGTCATCATCAGGCCTTTGGGGGTCCGGAGACGCGTGTTTCAGTTTCTTTGTGTTGTTACGTCTCCCACATATAATCTACTCTGTTATGCATTCTGTCTGTTTTAGTTTCATTGTGTTGTTACGTATGGTTCGGGTACTTTTATGANCGAACTATCTTATAAATACGTATACCTAGACTTGTTTAACATTTATATATTTCCGTACAAGACGTTTTGTTAGGATATTGGATGCTCGAGCACGGGATTATCTCNTGANCTTGTCACAGCAGAATATGAGTACTATGCAAGTNGTCTTTATTTATTTACTACTTCANTTCATTTTCGATANCTTTGACAGCATTTAAGTGTTTTTCGCTGCCATACTACTACCTATGACGTCCGACATATCGTTGCAGTTCATCGCTCCGCCAATATCNGCTNTGTGTCCATGACCTCTCGATAATTATCGGTTTCATACCTTCGCTCGGAGCAGGTGGTGAGTATAAGATACGTGCTATCGTAACCGGGATGTAGCAGTGAAGATGTGTAGAATATGATCAAGTNGTATGGTAGCTATATTAGTGCGACTATTCAATAGGGTACGTCGGATCACGTTAGTTGAAAGGTGTCTACTGCCCTCAATACAGTCTGTTTTNACGGTAANTGTTGGTTTTTATTTCACTGGCTCCAGATGAGTGATCATTCGATACTCGCTGGGTAATTAAGGCACCTGAACGGTATATAGATCGTTTAGTGCCGGGGTTTTATGATTCCTAACGCGTGAATTTATGCCNATTGGACATGAGNAAATGCATNAGGCCTTACTACNCTGGGGTCCCTTTTTCATTATAANGCCCGGAATGAGCNTAAGTNGGGTCTAAGAATTATATTTCCTTTACTCCNNNTGTTAAACACCTNACCTTTTTTTCCTTCTTTAAANATATTCTTTA
Open chromatogram file in a new tab
| Position | A peak | T peak | G peak | C peak | Total | A ratio | T ratio | G ratio | C ratio | Primary base | Quality score | Primary ratio |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 0 | 622 | 0 | 0 | 622 | 0.00 | 1.00 | 0.00 | 0.00 | T | 13 | 1.00 |
| 2 | 0 | 0 | 0 | 4 | 4 | 0.00 | 0.00 | 0.00 | 1.00 | C | 6 | 1.00 |
| 3 | 0 | 0 | 0 | 36 | 36 | 0.00 | 0.00 | 0.00 | 1.00 | C | 14 | 1.00 |
| 4 | 11 | 0 | 0 | 33 | 44 | 0.25 | 0.00 | 0.00 | 0.75 | C | 11 | 0.75 |
| 5 | 0 | 0 | 0 | 46 | 46 | 0.00 | 0.00 | 0.00 | 1.00 | C | 19 | 1.00 |
| 6 | 0 | 122 | 0 | 10 | 132 | 0.00 | 0.92 | 0.00 | 0.08 | T | 14 | 0.92 |
| 7 | 0 | 241 | 0 | 10 | 251 | 0.00 | 0.96 | 0.00 | 0.04 | T | 13 | 0.96 |
| 8 | 0 | 0 | 0 | 78 | 78 | 0.00 | 0.00 | 0.00 | 1.00 | C | 9 | 1.00 |
| 9 | 172 | 0 | 0 | 0 | 172 | 1.00 | 0.00 | 0.00 | 0.00 | A | 13 | 1.00 |
| 10 | 0 | 0 | 2314 | 0 | 2314 | 0.00 | 0.00 | 1.00 | 0.00 | G | 13 | 1.00 |
| 11 | 0 | 0 | 3541 | 0 | 3541 | 0.00 | 0.00 | 1.00 | 0.00 | G | 13 | 1.00 |
| 12 | 0 | 0 | 2027 | 0 | 2027 | 0.00 | 0.00 | 1.00 | 0.00 | G | 13 | 1.00 |
| 13 | 0 | 0 | 1706 | 0 | 1706 | 0.00 | 0.00 | 1.00 | 0.00 | G | 14 | 1.00 |
| 14 | 0 | 233 | 0 | 0 | 233 | 0.00 | 1.00 | 0.00 | 0.00 | T | 3 | 1.00 |
| 15 | 1 | 0 | 0 | 0 | 1 | 1.00 | 0.00 | 0.00 | 0.00 | A | 7 | 1.00 |
| 16 | 0 | 0 | 4 | 0 | 4 | 0.00 | 0.00 | 1.00 | 0.00 | G | 6 | 1.00 |
| 17 | 0 | 32766 | 9208 | 0 | 41974 | 0.00 | 0.78 | 0.22 | 0.00 | T | 8 | 0.78 |
| 18 | 32766 | 32766 | 50 | 0 | 65582 | 0.50 | 0.50 | 0.00 | 0.00 | A | 8 | 0.50 |
| 19 | 0 | 32766 | 0 | 0 | 32766 | 0.00 | 1.00 | 0.00 | 0.00 | T | 15 | 1.00 |
| 20 | 136 | 32766 | 0 | 0 | 32902 | 0.00 | 1.00 | 0.00 | 0.00 | T | 20 | 1.00 |
| 21 | 21374 | 32766 | 28 | 0 | 54168 | 0.39 | 0.60 | 0.00 | 0.00 | T | 12 | 0.60 |
| 22 | 0 | 0 | 32766 | 0 | 32766 | 0.00 | 0.00 | 1.00 | 0.00 | G | 20 | 1.00 |
| 23 | 48 | 70 | 32766 | 0 | 32884 | 0.00 | 0.00 | 1.00 | 0.00 | G | 30 | 1.00 |
| 24 | 0 | 32766 | 0 | 0 | 32766 | 0.00 | 1.00 | 0.00 | 0.00 | T | 20 | 1.00 |
| 25 | 0 | 32766 | 0 | 0 | 32766 | 0.00 | 1.00 | 0.00 | 0.00 | T | 17 | 1.00 |
| 26 | 18545 | 0 | 8965 | 0 | 27510 | 0.67 | 0.00 | 0.33 | 0.00 | A | 10 | 0.67 |
| 27 | 18445 | 22 | 0 | 0 | 18467 | 1.00 | 0.00 | 0.00 | 0.00 | A | 10 | 1.00 |
| 28 | 0 | 0 | 32766 | 0 | 32766 | 0.00 | 0.00 | 1.00 | 0.00 | G | 25 | 1.00 |
| 29 | 54 | 0 | 32766 | 0 | 32820 | 0.00 | 0.00 | 1.00 | 0.00 | G | 25 | 1.00 |
| 30 | 0 | 17 | 23379 | 0 | 23396 | 0.00 | 0.00 | 1.00 | 0.00 | G | 36 | 1.00 |
| 31 | 11 | 13839 | 14 | 0 | 13864 | 0.00 | 1.00 | 0.00 | 0.00 | T | 20 | 1.00 |
| 32 | 8642 | 9827 | 0 | 0 | 18469 | 0.47 | 0.53 | 0.00 | 0.00 | T | 17 | 0.53 |
| 33 | 0 | 11418 | 13 | 0 | 11431 | 0.00 | 1.00 | 0.00 | 0.00 | T | 19 | 1.00 |
| 34 | 26 | 14249 | 0 | 0 | 14275 | 0.00 | 1.00 | 0.00 | 0.00 | T | 28 | 1.00 |
| 35 | 0 | 13 | 22661 | 0 | 22674 | 0.00 | 0.00 | 1.00 | 0.00 | G | 14 | 1.00 |
| 36 | 319 | 13 | 0 | 0 | 332 | 0.96 | 0.04 | 0.00 | 0.00 | A | 5 | 0.96 |
| 37 | 0 | 0 | 5996 | 0 | 5996 | 0.00 | 0.00 | 1.00 | 0.00 | G | 5 | 1.00 |
| 38 | 0 | 4 | 0 | 0 | 4 | 0.00 | 1.00 | 0.00 | 0.00 | T | 26 | 1.00 |
| 39 | 6605 | 0 | 5 | 0 | 6610 | 1.00 | 0.00 | 0.00 | 0.00 | A | 25 | 1.00 |
| 40 | 0 | 6596 | 0 | 0 | 6596 | 0.00 | 1.00 | 0.00 | 0.00 | T | 35 | 1.00 |
| 41 | 7 | 7367 | 8 | 0 | 7382 | 0.00 | 1.00 | 0.00 | 0.00 | T | 40 | 1.00 |
| 42 | 464 | 0 | 9806 | 0 | 10270 | 0.05 | 0.00 | 0.95 | 0.00 | G | 40 | 0.95 |
| 43 | 0 | 3261 | 0 | 0 | 3261 | 0.00 | 1.00 | 0.00 | 0.00 | T | 21 | 1.00 |
| 44 | 2645 | 5 | 2821 | 0 | 5471 | 0.48 | 0.00 | 0.52 | 0.00 | G | 10 | 0.52 |
| 45 | 0 | 0 | 0 | 228 | 228 | 0.00 | 0.00 | 0.00 | 1.00 | C | 10 | 1.00 |
| 46 | 0 | 7 | 5190 | 4 | 5201 | 0.00 | 0.00 | 1.00 | 0.00 | G | 21 | 1.00 |
| 47 | 0 | 1188 | 0 | 0 | 1188 | 0.00 | 1.00 | 0.00 | 0.00 | T | 19 | 1.00 |
| 48 | 2992 | 0 | 143 | 0 | 3135 | 0.95 | 0.00 | 0.05 | 0.00 | A | 20 | 0.95 |
| 49 | 0 | 1843 | 1064 | 0 | 2907 | 0.00 | 0.63 | 0.37 | 0.00 | T | 8 | 0.63 |
| 50 | 47 | 3353 | 7 | 0 | 3407 | 0.01 | 0.98 | 0.00 | 0.00 | T | 20 | 0.98 |
| 51 | 0 | 2611 | 0 | 0 | 2611 | 0.00 | 1.00 | 0.00 | 0.00 | T | 42 | 1.00 |
| 52 | 0 | 12 | 6569 | 0 | 6581 | 0.00 | 0.00 | 1.00 | 0.00 | G | 39 | 1.00 |
| 53 | 0 | 987 | 0 | 37 | 1024 | 0.00 | 0.96 | 0.00 | 0.04 | T | 38 | 0.96 |
| 54 | 0 | 4 | 4037 | 25 | 4066 | 0.00 | 0.00 | 0.99 | 0.01 | G | 28 | 0.99 |
| 55 | 1193 | 17 | 0 | 22 | 1232 | 0.97 | 0.01 | 0.00 | 0.02 | A | 26 | 0.97 |
| 56 | 0 | 6 | 2017 | 17 | 2040 | 0.00 | 0.00 | 0.99 | 0.01 | G | 26 | 0.99 |
| 57 | 1 | 1477 | 412 | 46 | 1936 | 0.00 | 0.76 | 0.21 | 0.02 | T | 39 | 0.76 |
| 58 | 0 | 1158 | 0 | 267 | 1425 | 0.00 | 0.81 | 0.00 | 0.19 | T | 42 | 0.81 |
| 59 | 0 | 1755 | 0 | 0 | 1755 | 0.00 | 1.00 | 0.00 | 0.00 | T | 40 | 1.00 |
| 60 | 0 | 3 | 403 | 2002 | 2408 | 0.00 | 0.00 | 0.17 | 0.83 | C | 28 | 0.83 |
| 61 | 0 | 2 | 359 | 1322 | 1683 | 0.00 | 0.00 | 0.21 | 0.79 | C | 29 | 0.79 |
| 62 | 0 | 1653 | 3 | 0 | 1656 | 0.00 | 1.00 | 0.00 | 0.00 | T | 41 | 1.00 |
| 63 | 0 | 0 | 2 | 3086 | 3088 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 64 | 0 | 112 | 999 | 0 | 1111 | 0.00 | 0.10 | 0.90 | 0.00 | G | 28 | 0.90 |
| 65 | 894 | 351 | 0 | 0 | 1245 | 0.72 | 0.28 | 0.00 | 0.00 | A | 24 | 0.72 |
| 66 | 3 | 873 | 0 | 1788 | 2664 | 0.00 | 0.33 | 0.00 | 0.67 | C | 14 | 0.67 |
| 67 | 0 | 2738 | 5 | 3 | 2746 | 0.00 | 1.00 | 0.00 | 0.00 | T | 36 | 1.00 |
| 68 | 0 | 9 | 3023 | 95 | 3127 | 0.00 | 0.00 | 0.97 | 0.03 | G | 41 | 0.97 |
| 69 | 0 | 1444 | 7 | 0 | 1451 | 0.00 | 1.00 | 0.00 | 0.00 | T | 36 | 1.00 |
| 70 | 0 | 2 | 2751 | 0 | 2753 | 0.00 | 0.00 | 1.00 | 0.00 | G | 36 | 1.00 |
| 71 | 0 | 0 | 8 | 1757 | 1765 | 0.00 | 0.00 | 0.00 | 1.00 | C | 40 | 1.00 |
| 72 | 0 | 3 | 0 | 3079 | 3082 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 73 | 1 | 1025 | 0 | 0 | 1026 | 0.00 | 1.00 | 0.00 | 0.00 | T | 45 | 1.00 |
| 74 | 0 | 1565 | 0 | 0 | 1565 | 0.00 | 1.00 | 0.00 | 0.00 | T | 45 | 1.00 |
| 75 | 0 | 7 | 58 | 2794 | 2859 | 0.00 | 0.00 | 0.02 | 0.98 | C | 41 | 0.98 |
| 76 | 0 | 900 | 0 | 0 | 900 | 0.00 | 1.00 | 0.00 | 0.00 | T | 36 | 1.00 |
| 77 | 4417 | 3 | 0 | 0 | 4420 | 1.00 | 0.00 | 0.00 | 0.00 | A | 36 | 1.00 |
| 78 | 3514 | 0 | 0 | 0 | 3514 | 1.00 | 0.00 | 0.00 | 0.00 | A | 31 | 1.00 |
| 79 | 0 | 0 | 548 | 0 | 548 | 0.00 | 0.00 | 1.00 | 0.00 | G | 21 | 1.00 |
| 80 | 2701 | 0 | 134 | 0 | 2835 | 0.95 | 0.00 | 0.05 | 0.00 | A | 20 | 0.95 |
| 81 | 0 | 0 | 0 | 618 | 618 | 0.00 | 0.00 | 0.00 | 1.00 | C | 3 | 1.00 |
| 82 | 0 | 0 | 53 | 0 | 53 | 0.00 | 0.00 | 1.00 | 0.00 | G | 3 | 1.00 |
| 83 | 327 | 0 | 521 | 0 | 848 | 0.39 | 0.00 | 0.61 | 0.00 | G | 6 | 0.61 |
| 84 | 126 | 0 | 761 | 0 | 887 | 0.14 | 0.00 | 0.86 | 0.00 | G | 11 | 0.86 |
| 85 | 708 | 0 | 181 | 0 | 889 | 0.80 | 0.00 | 0.20 | 0.00 | A | 17 | 0.80 |
| 86 | 15 | 251 | 448 | 0 | 714 | 0.02 | 0.35 | 0.63 | 0.00 | G | 8 | 0.63 |
| 87 | 6 | 467 | 511 | 0 | 984 | 0.01 | 0.47 | 0.52 | 0.00 | G | 8 | 0.52 |
| 88 | 5 | 634 | 226 | 0 | 865 | 0.01 | 0.73 | 0.26 | 0.00 | T | 12 | 0.73 |
| 89 | 0 | 1035 | 0 | 0 | 1035 | 0.00 | 1.00 | 0.00 | 0.00 | T | 16 | 1.00 |
| 90 | 0 | 171 | 505 | 0 | 676 | 0.00 | 0.25 | 0.75 | 0.00 | G | 9 | 0.75 |
| 91 | 0 | 3 | 2 | 2550 | 2555 | 0.00 | 0.00 | 0.00 | 1.00 | C | 17 | 1.00 |
| 92 | 0 | 611 | 0 | 1691 | 2302 | 0.00 | 0.27 | 0.00 | 0.73 | C | 21 | 0.73 |
| 93 | 1 | 0 | 0 | 1320 | 1321 | 0.00 | 0.00 | 0.00 | 1.00 | C | 3 | 1.00 |
| 94 | 438 | 0 | 399 | 0 | 837 | 0.52 | 0.00 | 0.48 | 0.00 | A | 6 | 0.52 |
| 95 | 428 | 769 | 2 | 289 | 1488 | 0.29 | 0.52 | 0.00 | 0.19 | T | 8 | 0.52 |
| 96 | 6 | 1236 | 3 | 154 | 1399 | 0.00 | 0.88 | 0.00 | 0.11 | T | 20 | 0.88 |
| 97 | 57 | 291 | 1613 | 0 | 1961 | 0.03 | 0.15 | 0.82 | 0.00 | G | 8 | 0.82 |
| 98 | 171 | 424 | 279 | 68 | 942 | 0.18 | 0.45 | 0.30 | 0.07 | T | 8 | 0.45 |
| 99 | 78 | 696 | 0 | 51 | 825 | 0.09 | 0.84 | 0.00 | 0.06 | T | 14 | 0.84 |
| 100 | 0 | 0 | 1146 | 70 | 1216 | 0.00 | 0.00 | 0.94 | 0.06 | G | 26 | 0.94 |
| 101 | 82 | 109 | 325 | 0 | 516 | 0.16 | 0.21 | 0.63 | 0.00 | G | 20 | 0.63 |
| 102 | 0 | 467 | 0 | 186 | 653 | 0.00 | 0.72 | 0.00 | 0.28 | T | 20 | 0.72 |
| 103 | 0 | 560 | 0 | 0 | 560 | 0.00 | 1.00 | 0.00 | 0.00 | T | 25 | 1.00 |
| 104 | 0 | 0 | 859 | 0 | 859 | 0.00 | 0.00 | 1.00 | 0.00 | G | 23 | 1.00 |
| 105 | 295 | 0 | 0 | 36 | 331 | 0.89 | 0.00 | 0.00 | 0.11 | A | 20 | 0.89 |
| 106 | 0 | 397 | 140 | 0 | 537 | 0.00 | 0.74 | 0.26 | 0.00 | T | 13 | 0.74 |
| 107 | 25 | 0 | 626 | 4 | 655 | 0.04 | 0.00 | 0.96 | 0.01 | G | 16 | 0.96 |
| 108 | 0 | 278 | 0 | 0 | 278 | 0.00 | 1.00 | 0.00 | 0.00 | T | 15 | 1.00 |
| 109 | 277 | 0 | 0 | 0 | 277 | 1.00 | 0.00 | 0.00 | 0.00 | A | 23 | 1.00 |
| 110 | 0 | 294 | 738 | 0 | 1032 | 0.00 | 0.28 | 0.72 | 0.00 | G | 9 | 0.72 |
| 111 | 66 | 312 | 0 | 0 | 378 | 0.17 | 0.83 | 0.00 | 0.00 | T | 10 | 0.83 |
| 112 | 0 | 1 | 882 | 0 | 883 | 0.00 | 0.00 | 1.00 | 0.00 | G | 27 | 1.00 |
| 113 | 418 | 0 | 325 | 0 | 743 | 0.56 | 0.00 | 0.44 | 0.00 | A | 14 | 0.56 |
| 114 | 237 | 143 | 0 | 0 | 380 | 0.62 | 0.38 | 0.00 | 0.00 | A | 17 | 0.62 |
| 115 | 0 | 0 | 318 | 452 | 770 | 0.00 | 0.00 | 0.41 | 0.59 | C | 11 | 0.59 |
| 116 | 5 | 487 | 0 | 0 | 492 | 0.01 | 0.99 | 0.00 | 0.00 | T | 21 | 0.99 |
| 117 | 29 | 0 | 666 | 0 | 695 | 0.04 | 0.00 | 0.96 | 0.00 | G | 27 | 0.96 |
| 118 | 141 | 58 | 0 | 341 | 540 | 0.26 | 0.11 | 0.00 | 0.63 | C | 21 | 0.63 |
| 119 | 0 | 134 | 530 | 0 | 664 | 0.00 | 0.20 | 0.80 | 0.00 | G | 35 | 0.80 |
| 120 | 45 | 0 | 672 | 114 | 831 | 0.05 | 0.00 | 0.81 | 0.14 | G | 16 | 0.81 |
| 121 | 0 | 0 | 317 | 309 | 626 | 0.00 | 0.00 | 0.51 | 0.49 | G | 11 | 0.51 |
| 122 | 0 | 22 | 0 | 541 | 563 | 0.00 | 0.04 | 0.00 | 0.96 | C | 16 | 0.96 |
| 123 | 12 | 0 | 1212 | 0 | 1224 | 0.01 | 0.00 | 0.99 | 0.00 | G | 20 | 0.99 |
| 124 | 291 | 0 | 8 | 432 | 731 | 0.40 | 0.00 | 0.01 | 0.59 | C | 11 | 0.59 |
| 125 | 217 | 226 | 14 | 197 | 654 | 0.33 | 0.35 | 0.02 | 0.30 | T | 12 | 0.35 |
| 126 | 0 | 901 | 0 | 175 | 1076 | 0.00 | 0.84 | 0.00 | 0.16 | T | 20 | 0.84 |
| 127 | 3 | 170 | 1122 | 136 | 1431 | 0.00 | 0.12 | 0.78 | 0.10 | G | 30 | 0.78 |
| 128 | 199 | 290 | 0 | 0 | 489 | 0.41 | 0.59 | 0.00 | 0.00 | T | 19 | 0.59 |
| 129 | 0 | 649 | 220 | 50 | 919 | 0.00 | 0.71 | 0.24 | 0.05 | T | 16 | 0.71 |
| 130 | 0 | 510 | 2 | 515 | 1027 | 0.00 | 0.50 | 0.00 | 0.50 | C | 16 | 0.50 |
| 131 | 695 | 0 | 2 | 0 | 697 | 1.00 | 0.00 | 0.00 | 0.00 | A | 26 | 1.00 |
| 132 | 130 | 3 | 469 | 1 | 603 | 0.22 | 0.00 | 0.78 | 0.00 | G | 33 | 0.78 |
| 133 | 0 | 112 | 0 | 619 | 731 | 0.00 | 0.15 | 0.00 | 0.85 | C | 31 | 0.85 |
| 134 | 57 | 97 | 701 | 19 | 874 | 0.07 | 0.11 | 0.80 | 0.02 | G | 20 | 0.80 |
| 135 | 270 | 320 | 0 | 0 | 590 | 0.46 | 0.54 | 0.00 | 0.00 | T | 10 | 0.54 |
| 136 | 0 | 0 | 0 | 1084 | 1084 | 0.00 | 0.00 | 0.00 | 1.00 | C | 20 | 1.00 |
| 137 | 0 | 138 | 289 | 79 | 506 | 0.00 | 0.27 | 0.57 | 0.16 | G | 17 | 0.57 |
| 138 | 579 | 190 | 1 | 38 | 808 | 0.72 | 0.24 | 0.00 | 0.05 | A | 22 | 0.72 |
| 139 | 0 | 114 | 0 | 446 | 560 | 0.00 | 0.20 | 0.00 | 0.80 | C | 19 | 0.80 |
| 140 | 16 | 0 | 21 | 433 | 470 | 0.03 | 0.00 | 0.04 | 0.92 | C | 31 | 0.92 |
| 141 | 51 | 741 | 71 | 128 | 991 | 0.05 | 0.75 | 0.07 | 0.13 | T | 42 | 0.75 |
| 142 | 0 | 703 | 175 | 0 | 878 | 0.00 | 0.80 | 0.20 | 0.00 | T | 31 | 0.80 |
| 143 | 488 | 0 | 138 | 132 | 758 | 0.64 | 0.00 | 0.18 | 0.17 | A | 42 | 0.64 |
| 144 | 0 | 953 | 0 | 0 | 953 | 0.00 | 1.00 | 0.00 | 0.00 | T | 34 | 1.00 |
| 145 | 162 | 2 | 3 | 526 | 693 | 0.23 | 0.00 | 0.00 | 0.76 | C | 20 | 0.76 |
| 146 | 37 | 0 | 488 | 0 | 525 | 0.07 | 0.00 | 0.93 | 0.00 | G | 26 | 0.93 |
| 147 | 105 | 486 | 0 | 12 | 603 | 0.17 | 0.81 | 0.00 | 0.02 | T | 36 | 0.81 |
| 148 | 0 | 33 | 184 | 635 | 852 | 0.00 | 0.04 | 0.22 | 0.75 | C | 22 | 0.75 |
| 149 | 342 | 2 | 183 | 0 | 527 | 0.65 | 0.00 | 0.35 | 0.00 | A | 14 | 0.65 |
| 150 | 44 | 650 | 73 | 2 | 769 | 0.06 | 0.85 | 0.09 | 0.00 | T | 20 | 0.85 |
| 151 | 0 | 0 | 215 | 673 | 888 | 0.00 | 0.00 | 0.24 | 0.76 | C | 33 | 0.76 |
| 152 | 407 | 0 | 182 | 141 | 730 | 0.56 | 0.00 | 0.25 | 0.19 | A | 33 | 0.56 |
| 153 | 0 | 560 | 0 | 166 | 726 | 0.00 | 0.77 | 0.00 | 0.23 | T | 36 | 0.77 |
| 154 | 54 | 2 | 110 | 601 | 767 | 0.07 | 0.00 | 0.14 | 0.78 | C | 36 | 0.78 |
| 155 | 421 | 5 | 46 | 60 | 532 | 0.79 | 0.01 | 0.09 | 0.11 | A | 28 | 0.79 |
| 156 | 96 | 66 | 191 | 1 | 354 | 0.27 | 0.19 | 0.54 | 0.00 | G | 27 | 0.54 |
| 157 | 0 | 0 | 1133 | 33 | 1166 | 0.00 | 0.00 | 0.97 | 0.03 | G | 27 | 0.97 |
| 158 | 59 | 105 | 3 | 240 | 407 | 0.14 | 0.26 | 0.01 | 0.59 | C | 18 | 0.59 |
| 159 | 3 | 114 | 183 | 445 | 745 | 0.00 | 0.15 | 0.25 | 0.60 | C | 18 | 0.60 |
| 160 | 26 | 667 | 0 | 2 | 695 | 0.04 | 0.96 | 0.00 | 0.00 | T | 32 | 0.96 |
| 161 | 0 | 968 | 11 | 0 | 979 | 0.00 | 0.99 | 0.01 | 0.00 | T | 32 | 0.99 |
| 162 | 0 | 1018 | 0 | 186 | 1204 | 0.00 | 0.85 | 0.00 | 0.15 | T | 34 | 0.85 |
| 163 | 175 | 0 | 1591 | 186 | 1952 | 0.09 | 0.00 | 0.82 | 0.10 | G | 25 | 0.82 |
| 164 | 0 | 930 | 1419 | 0 | 2349 | 0.00 | 0.40 | 0.60 | 0.00 | G | 13 | 0.60 |
| 165 | 1227 | 335 | 2567 | 0 | 4129 | 0.30 | 0.08 | 0.62 | 0.00 | G | 8 | 0.62 |
| 166 | 0 | 193 | 1580 | 515 | 2288 | 0.00 | 0.08 | 0.69 | 0.23 | G | 9 | 0.69 |
| 167 | 383 | 0 | 963 | 1 | 1347 | 0.28 | 0.00 | 0.71 | 0.00 | G | 12 | 0.71 |
| 168 | 95 | 1305 | 0 | 1 | 1401 | 0.07 | 0.93 | 0.00 | 0.00 | T | 20 | 0.93 |
| 169 | 0 | 76 | 297 | 404 | 777 | 0.00 | 0.10 | 0.38 | 0.52 | C | 13 | 0.52 |
| 170 | 270 | 59 | 1 | 744 | 1074 | 0.25 | 0.05 | 0.00 | 0.69 | C | 13 | 0.69 |
| 171 | 86 | 124 | 265 | 21 | 496 | 0.17 | 0.25 | 0.53 | 0.04 | G | 13 | 0.53 |
| 172 | 0 | 469 | 625 | 0 | 1094 | 0.00 | 0.43 | 0.57 | 0.00 | G | 11 | 0.57 |
| 173 | 453 | 3 | 3 | 116 | 575 | 0.79 | 0.01 | 0.01 | 0.20 | A | 18 | 0.79 |
| 174 | 3 | 53 | 713 | 179 | 948 | 0.00 | 0.06 | 0.75 | 0.19 | G | 29 | 0.75 |
| 175 | 654 | 0 | 78 | 0 | 732 | 0.89 | 0.00 | 0.11 | 0.00 | A | 28 | 0.89 |
| 176 | 1 | 155 | 0 | 428 | 584 | 0.00 | 0.27 | 0.00 | 0.73 | C | 17 | 0.73 |
| 177 | 12 | 159 | 242 | 63 | 476 | 0.03 | 0.33 | 0.51 | 0.13 | G | 14 | 0.51 |
| 178 | 0 | 0 | 522 | 651 | 1173 | 0.00 | 0.00 | 0.45 | 0.55 | C | 12 | 0.55 |
| 179 | 0 | 59 | 368 | 19 | 446 | 0.00 | 0.13 | 0.83 | 0.04 | G | 11 | 0.83 |
| 180 | 135 | 206 | 0 | 46 | 387 | 0.35 | 0.53 | 0.00 | 0.12 | T | 31 | 0.53 |
| 181 | 1 | 3 | 1208 | 0 | 1212 | 0.00 | 0.00 | 1.00 | 0.00 | G | 27 | 1.00 |
| 182 | 0 | 552 | 9 | 127 | 688 | 0.00 | 0.80 | 0.01 | 0.18 | T | 36 | 0.80 |
| 183 | 68 | 280 | 140 | 0 | 488 | 0.14 | 0.57 | 0.29 | 0.00 | T | 19 | 0.57 |
| 184 | 109 | 778 | 0 | 0 | 887 | 0.12 | 0.88 | 0.00 | 0.00 | T | 22 | 0.88 |
| 185 | 44 | 173 | 0 | 180 | 397 | 0.11 | 0.44 | 0.00 | 0.45 | C | 17 | 0.45 |
| 186 | 735 | 36 | 211 | 0 | 982 | 0.75 | 0.04 | 0.21 | 0.00 | A | 18 | 0.75 |
| 187 | 0 | 103 | 516 | 13 | 632 | 0.00 | 0.16 | 0.82 | 0.02 | G | 41 | 0.82 |
| 188 | 143 | 626 | 86 | 0 | 855 | 0.17 | 0.73 | 0.10 | 0.00 | T | 41 | 0.73 |
| 189 | 0 | 1094 | 0 | 0 | 1094 | 0.00 | 1.00 | 0.00 | 0.00 | T | 41 | 1.00 |
| 190 | 226 | 833 | 50 | 2 | 1111 | 0.20 | 0.75 | 0.05 | 0.00 | T | 46 | 0.75 |
| 191 | 0 | 126 | 109 | 407 | 642 | 0.00 | 0.20 | 0.17 | 0.63 | C | 41 | 0.63 |
| 192 | 114 | 876 | 0 | 0 | 990 | 0.12 | 0.88 | 0.00 | 0.00 | T | 41 | 0.88 |
| 193 | 0 | 719 | 0 | 56 | 775 | 0.00 | 0.93 | 0.00 | 0.07 | T | 44 | 0.93 |
| 194 | 0 | 990 | 3 | 34 | 1027 | 0.00 | 0.96 | 0.00 | 0.03 | T | 47 | 0.96 |
| 195 | 42 | 0 | 831 | 18 | 891 | 0.05 | 0.00 | 0.93 | 0.02 | G | 47 | 0.93 |
| 196 | 13 | 853 | 2 | 0 | 868 | 0.01 | 0.98 | 0.00 | 0.00 | T | 43 | 0.98 |
| 197 | 0 | 0 | 597 | 51 | 648 | 0.00 | 0.00 | 0.92 | 0.08 | G | 43 | 0.92 |
| 198 | 34 | 714 | 0 | 0 | 748 | 0.05 | 0.95 | 0.00 | 0.00 | T | 40 | 0.95 |
| 199 | 10 | 549 | 0 | 0 | 559 | 0.02 | 0.98 | 0.00 | 0.00 | T | 40 | 0.98 |
| 200 | 76 | 17 | 607 | 47 | 747 | 0.10 | 0.02 | 0.81 | 0.06 | G | 28 | 0.81 |
| 201 | 0 | 390 | 0 | 0 | 390 | 0.00 | 1.00 | 0.00 | 0.00 | T | 21 | 1.00 |
| 202 | 0 | 678 | 0 | 256 | 934 | 0.00 | 0.73 | 0.00 | 0.27 | T | 21 | 0.73 |
| 203 | 592 | 17 | 0 | 36 | 645 | 0.92 | 0.03 | 0.00 | 0.06 | A | 26 | 0.92 |
| 204 | 3 | 0 | 303 | 686 | 992 | 0.00 | 0.00 | 0.31 | 0.69 | C | 20 | 0.69 |
| 205 | 0 | 162 | 402 | 35 | 599 | 0.00 | 0.27 | 0.67 | 0.06 | G | 20 | 0.67 |
| 206 | 3 | 575 | 0 | 133 | 711 | 0.00 | 0.81 | 0.00 | 0.19 | T | 26 | 0.81 |
| 207 | 68 | 9 | 22 | 525 | 624 | 0.11 | 0.01 | 0.04 | 0.84 | C | 28 | 0.84 |
| 208 | 0 | 533 | 344 | 78 | 955 | 0.00 | 0.56 | 0.36 | 0.08 | T | 20 | 0.56 |
| 209 | 40 | 0 | 72 | 468 | 580 | 0.07 | 0.00 | 0.12 | 0.81 | C | 26 | 0.81 |
| 210 | 5 | 34 | 0 | 590 | 629 | 0.01 | 0.05 | 0.00 | 0.94 | C | 36 | 0.94 |
| 211 | 0 | 49 | 6 | 226 | 281 | 0.00 | 0.17 | 0.02 | 0.80 | C | 28 | 0.80 |
| 212 | 341 | 62 | 0 | 32 | 435 | 0.78 | 0.14 | 0.00 | 0.07 | A | 28 | 0.78 |
| 213 | 88 | 11 | 176 | 265 | 540 | 0.16 | 0.02 | 0.33 | 0.49 | C | 18 | 0.49 |
| 214 | 608 | 1 | 0 | 135 | 744 | 0.82 | 0.00 | 0.00 | 0.18 | A | 28 | 0.82 |
| 215 | 57 | 252 | 0 | 102 | 411 | 0.14 | 0.61 | 0.00 | 0.25 | T | 32 | 0.61 |
| 216 | 690 | 4 | 19 | 0 | 713 | 0.97 | 0.01 | 0.03 | 0.00 | A | 25 | 0.97 |
| 217 | 173 | 537 | 0 | 0 | 710 | 0.24 | 0.76 | 0.00 | 0.00 | T | 16 | 0.76 |
| 218 | 214 | 3 | 133 | 64 | 414 | 0.52 | 0.01 | 0.32 | 0.15 | A | 6 | 0.52 |
| 219 | 339 | 0 | 203 | 7 | 549 | 0.62 | 0.00 | 0.37 | 0.01 | A | 6 | 0.62 |
| 220 | 185 | 400 | 46 | 52 | 683 | 0.27 | 0.59 | 0.07 | 0.08 | T | 7 | 0.59 |
| 221 | 33 | 0 | 0 | 664 | 697 | 0.05 | 0.00 | 0.00 | 0.95 | C | 30 | 0.95 |
| 222 | 0 | 518 | 0 | 0 | 518 | 0.00 | 1.00 | 0.00 | 0.00 | T | 39 | 1.00 |
| 223 | 860 | 10 | 24 | 0 | 894 | 0.96 | 0.01 | 0.03 | 0.00 | A | 30 | 0.96 |
| 224 | 0 | 38 | 221 | 532 | 791 | 0.00 | 0.05 | 0.28 | 0.67 | C | 30 | 0.67 |
| 225 | 174 | 569 | 1 | 119 | 863 | 0.20 | 0.66 | 0.00 | 0.14 | T | 12 | 0.66 |
| 226 | 10 | 0 | 364 | 383 | 757 | 0.01 | 0.00 | 0.48 | 0.51 | C | 12 | 0.51 |
| 227 | 333 | 453 | 0 | 0 | 786 | 0.42 | 0.58 | 0.00 | 0.00 | T | 8 | 0.58 |
| 228 | 0 | 0 | 750 | 235 | 985 | 0.00 | 0.00 | 0.76 | 0.24 | G | 9 | 0.76 |
| 229 | 37 | 550 | 0 | 86 | 673 | 0.05 | 0.82 | 0.00 | 0.13 | T | 25 | 0.82 |
| 230 | 0 | 423 | 0 | 418 | 841 | 0.00 | 0.50 | 0.00 | 0.50 | T | 17 | 0.50 |
| 231 | 698 | 0 | 6 | 0 | 704 | 0.99 | 0.00 | 0.01 | 0.00 | A | 26 | 0.99 |
| 232 | 12 | 433 | 0 | 181 | 626 | 0.02 | 0.69 | 0.00 | 0.29 | T | 21 | 0.69 |
| 233 | 0 | 2 | 878 | 169 | 1049 | 0.00 | 0.00 | 0.84 | 0.16 | G | 21 | 0.84 |
| 234 | 0 | 10 | 0 | 492 | 502 | 0.00 | 0.02 | 0.00 | 0.98 | C | 28 | 0.98 |
| 235 | 419 | 0 | 120 | 106 | 645 | 0.65 | 0.00 | 0.19 | 0.16 | A | 26 | 0.65 |
| 236 | 0 | 412 | 218 | 0 | 630 | 0.00 | 0.65 | 0.35 | 0.00 | T | 21 | 0.65 |
| 237 | 167 | 595 | 0 | 5 | 767 | 0.22 | 0.78 | 0.00 | 0.01 | T | 20 | 0.78 |
| 238 | 0 | 3 | 110 | 810 | 923 | 0.00 | 0.00 | 0.12 | 0.88 | C | 27 | 0.88 |
| 239 | 8 | 420 | 177 | 1 | 606 | 0.01 | 0.69 | 0.29 | 0.00 | T | 7 | 0.69 |
| 240 | 10 | 0 | 597 | 0 | 607 | 0.02 | 0.00 | 0.98 | 0.00 | G | 5 | 0.98 |
| 241 | 83 | 919 | 0 | 2 | 1004 | 0.08 | 0.92 | 0.00 | 0.00 | T | 25 | 0.92 |
| 242 | 66 | 3 | 32 | 831 | 932 | 0.07 | 0.00 | 0.03 | 0.89 | C | 36 | 0.89 |
| 243 | 0 | 545 | 40 | 0 | 585 | 0.00 | 0.93 | 0.07 | 0.00 | T | 32 | 0.93 |
| 244 | 245 | 0 | 893 | 145 | 1283 | 0.19 | 0.00 | 0.70 | 0.11 | G | 32 | 0.70 |
| 245 | 153 | 735 | 0 | 6 | 894 | 0.17 | 0.82 | 0.00 | 0.01 | T | 21 | 0.82 |
| 246 | 28 | 408 | 7 | 237 | 680 | 0.04 | 0.60 | 0.01 | 0.35 | T | 21 | 0.60 |
| 247 | 0 | 746 | 0 | 212 | 958 | 0.00 | 0.78 | 0.00 | 0.22 | T | 26 | 0.78 |
| 248 | 68 | 273 | 242 | 51 | 634 | 0.11 | 0.43 | 0.38 | 0.08 | T | 17 | 0.43 |
| 249 | 817 | 15 | 0 | 0 | 832 | 0.98 | 0.02 | 0.00 | 0.00 | A | 22 | 0.98 |
| 250 | 0 | 0 | 276 | 127 | 403 | 0.00 | 0.00 | 0.68 | 0.32 | G | 30 | 0.68 |
| 251 | 31 | 460 | 0 | 0 | 491 | 0.06 | 0.94 | 0.00 | 0.00 | T | 33 | 0.94 |
| 252 | 40 | 527 | 0 | 0 | 567 | 0.07 | 0.93 | 0.00 | 0.00 | T | 37 | 0.93 |
| 253 | 113 | 441 | 52 | 62 | 668 | 0.17 | 0.66 | 0.08 | 0.09 | T | 21 | 0.66 |
| 254 | 0 | 0 | 0 | 466 | 466 | 0.00 | 0.00 | 0.00 | 1.00 | C | 16 | 1.00 |
| 255 | 384 | 373 | 49 | 37 | 843 | 0.46 | 0.44 | 0.06 | 0.04 | A | 10 | 0.46 |
| 256 | 126 | 406 | 23 | 44 | 599 | 0.21 | 0.68 | 0.04 | 0.07 | T | 11 | 0.68 |
| 257 | 151 | 728 | 0 | 0 | 879 | 0.17 | 0.83 | 0.00 | 0.00 | T | 41 | 0.83 |
| 258 | 0 | 0 | 796 | 149 | 945 | 0.00 | 0.00 | 0.84 | 0.16 | G | 37 | 0.84 |
| 259 | 0 | 565 | 3 | 0 | 568 | 0.00 | 0.99 | 0.01 | 0.00 | T | 38 | 0.99 |
| 260 | 20 | 0 | 677 | 0 | 697 | 0.03 | 0.00 | 0.97 | 0.00 | G | 42 | 0.97 |
| 261 | 32 | 642 | 0 | 0 | 674 | 0.05 | 0.95 | 0.00 | 0.00 | T | 25 | 0.95 |
| 262 | 52 | 270 | 0 | 145 | 467 | 0.11 | 0.58 | 0.00 | 0.31 | T | 14 | 0.58 |
| 263 | 0 | 0 | 601 | 89 | 690 | 0.00 | 0.00 | 0.87 | 0.13 | G | 9 | 0.87 |
| 264 | 19 | 258 | 0 | 0 | 277 | 0.07 | 0.93 | 0.00 | 0.00 | T | 22 | 0.93 |
| 265 | 0 | 284 | 123 | 0 | 407 | 0.00 | 0.70 | 0.30 | 0.00 | T | 23 | 0.70 |
| 266 | 463 | 0 | 31 | 7 | 501 | 0.92 | 0.00 | 0.06 | 0.01 | A | 21 | 0.92 |
| 267 | 2 | 0 | 201 | 464 | 667 | 0.00 | 0.00 | 0.30 | 0.70 | C | 17 | 0.70 |
| 268 | 127 | 0 | 161 | 21 | 309 | 0.41 | 0.00 | 0.52 | 0.07 | G | 12 | 0.52 |
| 269 | 0 | 422 | 111 | 0 | 533 | 0.00 | 0.79 | 0.21 | 0.00 | T | 16 | 0.79 |
| 270 | 552 | 3 | 0 | 30 | 585 | 0.94 | 0.01 | 0.00 | 0.05 | A | 37 | 0.94 |
| 271 | 0 | 475 | 0 | 0 | 475 | 0.00 | 1.00 | 0.00 | 0.00 | T | 34 | 1.00 |
| 272 | 0 | 0 | 342 | 125 | 467 | 0.00 | 0.00 | 0.73 | 0.27 | G | 20 | 0.73 |
| 273 | 46 | 0 | 608 | 326 | 980 | 0.05 | 0.00 | 0.62 | 0.33 | G | 12 | 0.62 |
| 274 | 0 | 329 | 0 | 279 | 608 | 0.00 | 0.54 | 0.00 | 0.46 | T | 8 | 0.54 |
| 275 | 136 | 245 | 137 | 0 | 518 | 0.26 | 0.47 | 0.26 | 0.00 | T | 8 | 0.47 |
| 276 | 0 | 63 | 0 | 795 | 858 | 0.00 | 0.07 | 0.00 | 0.93 | C | 15 | 0.93 |
| 277 | 0 | 0 | 639 | 161 | 800 | 0.00 | 0.00 | 0.80 | 0.20 | G | 16 | 0.80 |
| 278 | 41 | 0 | 251 | 209 | 501 | 0.08 | 0.00 | 0.50 | 0.42 | G | 8 | 0.50 |
| 279 | 11 | 42 | 232 | 0 | 285 | 0.04 | 0.15 | 0.81 | 0.00 | G | 16 | 0.81 |
| 280 | 0 | 269 | 0 | 195 | 464 | 0.00 | 0.58 | 0.00 | 0.42 | T | 30 | 0.58 |
| 281 | 441 | 0 | 58 | 0 | 499 | 0.88 | 0.00 | 0.12 | 0.00 | A | 37 | 0.88 |
| 282 | 1 | 0 | 0 | 471 | 472 | 0.00 | 0.00 | 0.00 | 1.00 | C | 20 | 1.00 |
| 283 | 68 | 173 | 71 | 0 | 312 | 0.22 | 0.55 | 0.23 | 0.00 | T | 30 | 0.55 |
| 284 | 19 | 735 | 0 | 4 | 758 | 0.03 | 0.97 | 0.00 | 0.01 | T | 35 | 0.97 |
| 285 | 40 | 503 | 59 | 0 | 602 | 0.07 | 0.84 | 0.10 | 0.00 | T | 36 | 0.84 |
| 286 | 0 | 578 | 48 | 131 | 757 | 0.00 | 0.76 | 0.06 | 0.17 | T | 36 | 0.76 |
| 287 | 540 | 0 | 0 | 0 | 540 | 1.00 | 0.00 | 0.00 | 0.00 | A | 40 | 1.00 |
| 288 | 32 | 593 | 0 | 9 | 634 | 0.05 | 0.94 | 0.00 | 0.01 | T | 42 | 0.94 |
| 289 | 0 | 81 | 633 | 107 | 821 | 0.00 | 0.10 | 0.77 | 0.13 | G | 36 | 0.77 |
| 290 | 806 | 0 | 0 | 156 | 962 | 0.84 | 0.00 | 0.00 | 0.16 | A | 22 | 0.84 |
| 291 | 171 | 228 | 239 | 363 | 1001 | 0.17 | 0.23 | 0.24 | 0.36 | N | 11 | 0.36 |
| 292 | 119 | 117 | 339 | 552 | 1127 | 0.11 | 0.10 | 0.30 | 0.49 | C | 11 | 0.49 |
| 293 | 113 | 317 | 602 | 46 | 1078 | 0.10 | 0.29 | 0.56 | 0.04 | G | 15 | 0.56 |
| 294 | 681 | 0 | 159 | 95 | 935 | 0.73 | 0.00 | 0.17 | 0.10 | A | 22 | 0.73 |
| 295 | 334 | 66 | 217 | 41 | 658 | 0.51 | 0.10 | 0.33 | 0.06 | A | 15 | 0.51 |
| 296 | 0 | 26 | 269 | 398 | 693 | 0.00 | 0.04 | 0.39 | 0.57 | C | 15 | 0.57 |
| 297 | 0 | 481 | 0 | 150 | 631 | 0.00 | 0.76 | 0.00 | 0.24 | T | 20 | 0.76 |
| 298 | 384 | 0 | 23 | 165 | 572 | 0.67 | 0.00 | 0.04 | 0.29 | A | 33 | 0.67 |
| 299 | 25 | 543 | 85 | 170 | 823 | 0.03 | 0.66 | 0.10 | 0.21 | T | 19 | 0.66 |
| 300 | 13 | 187 | 89 | 223 | 512 | 0.03 | 0.37 | 0.17 | 0.44 | C | 20 | 0.44 |
| 301 | 90 | 631 | 29 | 0 | 750 | 0.12 | 0.84 | 0.04 | 0.00 | T | 26 | 0.84 |
| 302 | 0 | 347 | 148 | 12 | 507 | 0.00 | 0.68 | 0.29 | 0.02 | T | 35 | 0.68 |
| 303 | 483 | 0 | 22 | 87 | 592 | 0.82 | 0.00 | 0.04 | 0.15 | A | 35 | 0.82 |
| 304 | 0 | 491 | 21 | 52 | 564 | 0.00 | 0.87 | 0.04 | 0.09 | T | 43 | 0.87 |
| 305 | 369 | 0 | 53 | 0 | 422 | 0.87 | 0.00 | 0.13 | 0.00 | A | 35 | 0.87 |
| 306 | 284 | 152 | 12 | 80 | 528 | 0.54 | 0.29 | 0.02 | 0.15 | A | 19 | 0.54 |
| 307 | 280 | 0 | 41 | 94 | 415 | 0.67 | 0.00 | 0.10 | 0.23 | A | 33 | 0.67 |
| 308 | 81 | 640 | 1 | 0 | 722 | 0.11 | 0.89 | 0.00 | 0.00 | T | 13 | 0.89 |
| 309 | 226 | 28 | 89 | 0 | 343 | 0.66 | 0.08 | 0.26 | 0.00 | A | 3 | 0.66 |
| 310 | 0 | 0 | 0 | 44 | 44 | 0.00 | 0.00 | 0.00 | 1.00 | C | 3 | 1.00 |
| 311 | 78 | 8 | 412 | 26 | 524 | 0.15 | 0.02 | 0.79 | 0.05 | G | 33 | 0.79 |
| 312 | 0 | 353 | 0 | 0 | 353 | 0.00 | 1.00 | 0.00 | 0.00 | T | 38 | 1.00 |
| 313 | 559 | 0 | 105 | 58 | 722 | 0.77 | 0.00 | 0.15 | 0.08 | A | 41 | 0.77 |
| 314 | 0 | 425 | 0 | 0 | 425 | 0.00 | 1.00 | 0.00 | 0.00 | T | 41 | 1.00 |
| 315 | 547 | 0 | 0 | 0 | 547 | 1.00 | 0.00 | 0.00 | 0.00 | A | 36 | 1.00 |
| 316 | 1 | 26 | 152 | 431 | 610 | 0.00 | 0.04 | 0.25 | 0.71 | C | 34 | 0.71 |
| 317 | 1 | 128 | 5 | 304 | 438 | 0.00 | 0.29 | 0.01 | 0.69 | C | 19 | 0.69 |
| 318 | 11 | 372 | 3 | 147 | 533 | 0.02 | 0.70 | 0.01 | 0.28 | T | 12 | 0.70 |
| 319 | 118 | 5 | 0 | 79 | 202 | 0.58 | 0.02 | 0.00 | 0.39 | A | 7 | 0.58 |
| 320 | 0 | 5 | 107 | 0 | 112 | 0.00 | 0.04 | 0.96 | 0.00 | G | 7 | 0.96 |
| 321 | 315 | 39 | 91 | 58 | 503 | 0.63 | 0.08 | 0.18 | 0.12 | A | 12 | 0.63 |
| 322 | 0 | 23 | 49 | 353 | 425 | 0.00 | 0.05 | 0.12 | 0.83 | C | 37 | 0.83 |
| 323 | 82 | 483 | 69 | 42 | 676 | 0.12 | 0.71 | 0.10 | 0.06 | T | 39 | 0.71 |
| 324 | 8 | 514 | 0 | 16 | 538 | 0.01 | 0.96 | 0.00 | 0.03 | T | 40 | 0.96 |
| 325 | 0 | 2 | 753 | 130 | 885 | 0.00 | 0.00 | 0.85 | 0.15 | G | 31 | 0.85 |
| 326 | 46 | 324 | 0 | 13 | 383 | 0.12 | 0.85 | 0.00 | 0.03 | T | 27 | 0.85 |
| 327 | 145 | 286 | 4 | 1 | 436 | 0.33 | 0.66 | 0.01 | 0.00 | T | 22 | 0.66 |
| 328 | 0 | 680 | 0 | 86 | 766 | 0.00 | 0.89 | 0.00 | 0.11 | T | 26 | 0.89 |
| 329 | 426 | 0 | 1 | 0 | 427 | 1.00 | 0.00 | 0.00 | 0.00 | A | 40 | 1.00 |
| 330 | 436 | 0 | 116 | 91 | 643 | 0.68 | 0.00 | 0.18 | 0.14 | A | 36 | 0.68 |
| 331 | 17 | 64 | 58 | 243 | 382 | 0.04 | 0.17 | 0.15 | 0.64 | C | 34 | 0.64 |
| 332 | 383 | 0 | 21 | 0 | 404 | 0.95 | 0.00 | 0.05 | 0.00 | A | 26 | 0.95 |
| 333 | 0 | 405 | 0 | 163 | 568 | 0.00 | 0.71 | 0.00 | 0.29 | T | 22 | 0.71 |
| 334 | 32 | 643 | 0 | 80 | 755 | 0.04 | 0.85 | 0.00 | 0.11 | T | 27 | 0.85 |
| 335 | 0 | 427 | 42 | 10 | 479 | 0.00 | 0.89 | 0.09 | 0.02 | T | 36 | 0.89 |
| 336 | 424 | 4 | 72 | 104 | 604 | 0.70 | 0.01 | 0.12 | 0.17 | A | 35 | 0.70 |
| 337 | 43 | 384 | 29 | 0 | 456 | 0.09 | 0.84 | 0.06 | 0.00 | T | 20 | 0.84 |
| 338 | 110 | 0 | 29 | 20 | 159 | 0.69 | 0.00 | 0.18 | 0.13 | A | 22 | 0.69 |
| 339 | 0 | 609 | 32 | 0 | 641 | 0.00 | 0.95 | 0.05 | 0.00 | T | 34 | 0.95 |
| 340 | 222 | 0 | 108 | 18 | 348 | 0.64 | 0.00 | 0.31 | 0.05 | A | 25 | 0.64 |
| 341 | 0 | 470 | 183 | 23 | 676 | 0.00 | 0.70 | 0.27 | 0.03 | T | 20 | 0.70 |
| 342 | 118 | 272 | 0 | 104 | 494 | 0.24 | 0.55 | 0.00 | 0.21 | T | 21 | 0.55 |
| 343 | 48 | 478 | 16 | 5 | 547 | 0.09 | 0.87 | 0.03 | 0.01 | T | 36 | 0.87 |
| 344 | 30 | 3 | 21 | 283 | 337 | 0.09 | 0.01 | 0.06 | 0.84 | C | 43 | 0.84 |
| 345 | 0 | 19 | 0 | 436 | 455 | 0.00 | 0.04 | 0.00 | 0.96 | C | 28 | 0.96 |
| 346 | 36 | 140 | 545 | 2 | 723 | 0.05 | 0.19 | 0.75 | 0.00 | G | 36 | 0.75 |
| 347 | 0 | 336 | 0 | 67 | 403 | 0.00 | 0.83 | 0.00 | 0.17 | T | 34 | 0.83 |
| 348 | 398 | 65 | 49 | 39 | 551 | 0.72 | 0.12 | 0.09 | 0.07 | A | 26 | 0.72 |
| 349 | 251 | 0 | 52 | 285 | 588 | 0.43 | 0.00 | 0.09 | 0.48 | C | 12 | 0.48 |
| 350 | 146 | 23 | 19 | 120 | 308 | 0.47 | 0.07 | 0.06 | 0.39 | A | 12 | 0.47 |
| 351 | 440 | 0 | 0 | 100 | 540 | 0.81 | 0.00 | 0.00 | 0.19 | A | 23 | 0.81 |
| 352 | 0 | 15 | 270 | 0 | 285 | 0.00 | 0.05 | 0.95 | 0.00 | G | 36 | 0.95 |
| 353 | 668 | 0 | 0 | 129 | 797 | 0.84 | 0.00 | 0.00 | 0.16 | A | 34 | 0.84 |
| 354 | 0 | 11 | 52 | 279 | 342 | 0.00 | 0.03 | 0.15 | 0.82 | C | 34 | 0.82 |
| 355 | 0 | 15 | 555 | 2 | 572 | 0.00 | 0.03 | 0.97 | 0.00 | G | 42 | 0.97 |
| 356 | 0 | 459 | 0 | 45 | 504 | 0.00 | 0.91 | 0.00 | 0.09 | T | 31 | 0.91 |
| 357 | 95 | 298 | 15 | 137 | 545 | 0.17 | 0.55 | 0.03 | 0.25 | T | 20 | 0.55 |
| 358 | 73 | 494 | 0 | 0 | 567 | 0.13 | 0.87 | 0.00 | 0.00 | T | 28 | 0.87 |
| 359 | 0 | 469 | 151 | 37 | 657 | 0.00 | 0.71 | 0.23 | 0.06 | T | 36 | 0.71 |
| 360 | 0 | 2 | 846 | 109 | 957 | 0.00 | 0.00 | 0.88 | 0.11 | G | 21 | 0.88 |
| 361 | 123 | 266 | 18 | 28 | 435 | 0.28 | 0.61 | 0.04 | 0.06 | T | 20 | 0.61 |
| 362 | 0 | 527 | 18 | 158 | 703 | 0.00 | 0.75 | 0.03 | 0.22 | T | 20 | 0.75 |
| 363 | 625 | 0 | 0 | 8 | 633 | 0.99 | 0.00 | 0.00 | 0.01 | A | 20 | 0.99 |
| 364 | 228 | 204 | 296 | 0 | 728 | 0.31 | 0.28 | 0.41 | 0.00 | G | 10 | 0.41 |
| 365 | 0 | 193 | 330 | 314 | 837 | 0.00 | 0.23 | 0.39 | 0.38 | G | 10 | 0.39 |
| 366 | 305 | 3 | 0 | 45 | 353 | 0.86 | 0.01 | 0.00 | 0.13 | A | 16 | 0.86 |
| 367 | 0 | 707 | 0 | 71 | 778 | 0.00 | 0.91 | 0.00 | 0.09 | T | 26 | 0.91 |
| 368 | 321 | 28 | 107 | 0 | 456 | 0.70 | 0.06 | 0.23 | 0.00 | A | 33 | 0.70 |
| 369 | 42 | 560 | 0 | 69 | 671 | 0.06 | 0.83 | 0.00 | 0.10 | T | 36 | 0.83 |
| 370 | 0 | 347 | 0 | 53 | 400 | 0.00 | 0.87 | 0.00 | 0.13 | T | 36 | 0.87 |
| 371 | 134 | 0 | 635 | 0 | 769 | 0.17 | 0.00 | 0.83 | 0.00 | G | 26 | 0.83 |
| 372 | 10 | 89 | 273 | 140 | 512 | 0.02 | 0.17 | 0.53 | 0.27 | G | 22 | 0.53 |
| 373 | 615 | 0 | 0 | 9 | 624 | 0.99 | 0.00 | 0.00 | 0.01 | A | 26 | 0.99 |
| 374 | 0 | 361 | 0 | 0 | 361 | 0.00 | 1.00 | 0.00 | 0.00 | T | 36 | 1.00 |
| 375 | 0 | 143 | 373 | 17 | 533 | 0.00 | 0.27 | 0.70 | 0.03 | G | 36 | 0.70 |
| 376 | 77 | 49 | 0 | 462 | 588 | 0.13 | 0.08 | 0.00 | 0.79 | C | 34 | 0.79 |
| 377 | 6 | 489 | 48 | 0 | 543 | 0.01 | 0.90 | 0.09 | 0.00 | T | 36 | 0.90 |
| 378 | 71 | 0 | 0 | 346 | 417 | 0.17 | 0.00 | 0.00 | 0.83 | C | 32 | 0.83 |
| 379 | 124 | 44 | 595 | 2 | 765 | 0.16 | 0.06 | 0.78 | 0.00 | G | 28 | 0.78 |
| 380 | 168 | 104 | 0 | 0 | 272 | 0.62 | 0.38 | 0.00 | 0.00 | A | 20 | 0.62 |
| 381 | 40 | 0 | 453 | 69 | 562 | 0.07 | 0.00 | 0.81 | 0.12 | G | 28 | 0.81 |
| 382 | 0 | 128 | 0 | 375 | 503 | 0.00 | 0.25 | 0.00 | 0.75 | C | 25 | 0.75 |
| 383 | 174 | 0 | 0 | 0 | 174 | 1.00 | 0.00 | 0.00 | 0.00 | A | 16 | 1.00 |
| 384 | 144 | 1 | 64 | 186 | 395 | 0.36 | 0.00 | 0.16 | 0.47 | C | 10 | 0.47 |
| 385 | 0 | 20 | 386 | 0 | 406 | 0.00 | 0.05 | 0.95 | 0.00 | G | 21 | 0.95 |
| 386 | 0 | 47 | 292 | 96 | 435 | 0.00 | 0.11 | 0.67 | 0.22 | G | 21 | 0.67 |
| 387 | 117 | 0 | 154 | 119 | 390 | 0.30 | 0.00 | 0.39 | 0.31 | G | 10 | 0.39 |
| 388 | 274 | 0 | 90 | 71 | 435 | 0.63 | 0.00 | 0.21 | 0.16 | A | 10 | 0.63 |
| 389 | 0 | 290 | 53 | 0 | 343 | 0.00 | 0.85 | 0.15 | 0.00 | T | 27 | 0.85 |
| 390 | 0 | 543 | 56 | 16 | 615 | 0.00 | 0.88 | 0.09 | 0.03 | T | 30 | 0.88 |
| 391 | 328 | 0 | 40 | 10 | 378 | 0.87 | 0.00 | 0.11 | 0.03 | A | 31 | 0.87 |
| 392 | 93 | 481 | 25 | 0 | 599 | 0.16 | 0.80 | 0.04 | 0.00 | T | 21 | 0.80 |
| 393 | 4 | 45 | 144 | 223 | 416 | 0.01 | 0.11 | 0.35 | 0.54 | C | 14 | 0.54 |
| 394 | 9 | 555 | 84 | 0 | 648 | 0.01 | 0.86 | 0.13 | 0.00 | T | 21 | 0.86 |
| 395 | 19 | 58 | 19 | 291 | 387 | 0.05 | 0.15 | 0.05 | 0.75 | C | 27 | 0.75 |
| 396 | 56 | 110 | 70 | 215 | 451 | 0.12 | 0.24 | 0.16 | 0.48 | N | 30 | 0.48 |
| 397 | 12 | 255 | 0 | 0 | 267 | 0.04 | 0.96 | 0.00 | 0.00 | T | 27 | 0.96 |
| 398 | 3 | 154 | 350 | 73 | 580 | 0.01 | 0.27 | 0.60 | 0.13 | G | 20 | 0.60 |
| 399 | 338 | 22 | 0 | 59 | 419 | 0.81 | 0.05 | 0.00 | 0.14 | A | 28 | 0.81 |
| 400 | 198 | 115 | 121 | 54 | 488 | 0.41 | 0.24 | 0.25 | 0.11 | N | 20 | 0.41 |
| 401 | 0 | 43 | 95 | 414 | 552 | 0.00 | 0.08 | 0.17 | 0.75 | C | 28 | 0.75 |
| 402 | 77 | 322 | 0 | 10 | 409 | 0.19 | 0.79 | 0.00 | 0.02 | T | 32 | 0.79 |
| 403 | 67 | 430 | 0 | 7 | 504 | 0.13 | 0.85 | 0.00 | 0.01 | T | 36 | 0.85 |
| 404 | 0 | 0 | 335 | 0 | 335 | 0.00 | 0.00 | 1.00 | 0.00 | G | 32 | 1.00 |
| 405 | 29 | 192 | 0 | 35 | 256 | 0.11 | 0.75 | 0.00 | 0.14 | T | 32 | 0.75 |
| 406 | 0 | 47 | 0 | 271 | 318 | 0.00 | 0.15 | 0.00 | 0.85 | C | 27 | 0.85 |
| 407 | 178 | 79 | 172 | 0 | 429 | 0.41 | 0.18 | 0.40 | 0.00 | A | 21 | 0.41 |
| 408 | 55 | 0 | 0 | 229 | 284 | 0.19 | 0.00 | 0.00 | 0.81 | C | 28 | 0.81 |
| 409 | 309 | 75 | 104 | 0 | 488 | 0.63 | 0.15 | 0.21 | 0.00 | A | 32 | 0.63 |
| 410 | 0 | 81 | 307 | 56 | 444 | 0.00 | 0.18 | 0.69 | 0.13 | G | 32 | 0.69 |
| 411 | 0 | 114 | 0 | 199 | 313 | 0.00 | 0.36 | 0.00 | 0.64 | C | 31 | 0.64 |
| 412 | 157 | 87 | 0 | 55 | 299 | 0.53 | 0.29 | 0.00 | 0.18 | A | 28 | 0.53 |
| 413 | 0 | 0 | 225 | 74 | 299 | 0.00 | 0.00 | 0.75 | 0.25 | G | 32 | 0.75 |
| 414 | 270 | 15 | 40 | 74 | 399 | 0.68 | 0.04 | 0.10 | 0.19 | A | 31 | 0.68 |
| 415 | 247 | 0 | 111 | 41 | 399 | 0.62 | 0.00 | 0.28 | 0.10 | A | 27 | 0.62 |
| 416 | 0 | 196 | 102 | 73 | 371 | 0.00 | 0.53 | 0.27 | 0.20 | T | 20 | 0.53 |
| 417 | 420 | 0 | 0 | 0 | 420 | 1.00 | 0.00 | 0.00 | 0.00 | A | 27 | 1.00 |
| 418 | 99 | 221 | 25 | 50 | 395 | 0.25 | 0.56 | 0.06 | 0.13 | T | 31 | 0.56 |
| 419 | 0 | 14 | 249 | 19 | 282 | 0.00 | 0.05 | 0.88 | 0.07 | G | 31 | 0.88 |
| 420 | 212 | 8 | 0 | 35 | 255 | 0.83 | 0.03 | 0.00 | 0.14 | A | 34 | 0.83 |
| 421 | 0 | 0 | 229 | 2 | 231 | 0.00 | 0.00 | 0.99 | 0.01 | G | 27 | 0.99 |
| 422 | 118 | 170 | 48 | 24 | 360 | 0.33 | 0.47 | 0.13 | 0.07 | T | 20 | 0.47 |
| 423 | 353 | 40 | 41 | 3 | 437 | 0.81 | 0.09 | 0.09 | 0.01 | A | 27 | 0.81 |
| 424 | 40 | 0 | 207 | 305 | 552 | 0.07 | 0.00 | 0.38 | 0.55 | C | 28 | 0.55 |
| 425 | 0 | 233 | 0 | 0 | 233 | 0.00 | 1.00 | 0.00 | 0.00 | T | 34 | 1.00 |
| 426 | 411 | 0 | 0 | 13 | 424 | 0.97 | 0.00 | 0.00 | 0.03 | A | 32 | 0.97 |
| 427 | 45 | 357 | 41 | 17 | 460 | 0.10 | 0.78 | 0.09 | 0.04 | T | 32 | 0.78 |
| 428 | 0 | 52 | 291 | 0 | 343 | 0.00 | 0.15 | 0.85 | 0.00 | G | 27 | 0.85 |
| 429 | 0 | 80 | 42 | 200 | 322 | 0.00 | 0.25 | 0.13 | 0.62 | C | 20 | 0.62 |
| 430 | 110 | 12 | 0 | 0 | 122 | 0.90 | 0.10 | 0.00 | 0.00 | A | 16 | 0.90 |
| 431 | 80 | 0 | 0 | 68 | 148 | 0.54 | 0.00 | 0.00 | 0.46 | A | 8 | 0.54 |
| 432 | 0 | 0 | 266 | 0 | 266 | 0.00 | 0.00 | 1.00 | 0.00 | G | 21 | 1.00 |
| 433 | 0 | 190 | 0 | 104 | 294 | 0.00 | 0.65 | 0.00 | 0.35 | T | 16 | 0.65 |
| 434 | 55 | 66 | 99 | 116 | 336 | 0.16 | 0.20 | 0.29 | 0.35 | N | 9 | 0.35 |
| 435 | 175 | 0 | 181 | 50 | 406 | 0.43 | 0.00 | 0.45 | 0.12 | G | 9 | 0.45 |
| 436 | 27 | 222 | 0 | 103 | 352 | 0.08 | 0.63 | 0.00 | 0.29 | T | 16 | 0.63 |
| 437 | 27 | 0 | 130 | 243 | 400 | 0.07 | 0.00 | 0.32 | 0.61 | C | 14 | 0.61 |
| 438 | 71 | 189 | 45 | 0 | 305 | 0.23 | 0.62 | 0.15 | 0.00 | T | 27 | 0.62 |
| 439 | 44 | 227 | 64 | 76 | 411 | 0.11 | 0.55 | 0.16 | 0.18 | T | 21 | 0.55 |
| 440 | 0 | 181 | 0 | 39 | 220 | 0.00 | 0.82 | 0.00 | 0.18 | T | 28 | 0.82 |
| 441 | 234 | 0 | 77 | 0 | 311 | 0.75 | 0.00 | 0.25 | 0.00 | A | 25 | 0.75 |
| 442 | 90 | 219 | 0 | 71 | 380 | 0.24 | 0.58 | 0.00 | 0.19 | T | 22 | 0.58 |
| 443 | 33 | 297 | 83 | 0 | 413 | 0.08 | 0.72 | 0.20 | 0.00 | T | 16 | 0.72 |
| 444 | 184 | 298 | 0 | 103 | 585 | 0.31 | 0.51 | 0.00 | 0.18 | T | 28 | 0.51 |
| 445 | 210 | 0 | 0 | 92 | 302 | 0.70 | 0.00 | 0.00 | 0.30 | A | 29 | 0.70 |
| 446 | 0 | 285 | 131 | 92 | 508 | 0.00 | 0.56 | 0.26 | 0.18 | T | 21 | 0.56 |
| 447 | 132 | 255 | 0 | 43 | 430 | 0.31 | 0.59 | 0.00 | 0.10 | T | 13 | 0.59 |
| 448 | 0 | 392 | 89 | 0 | 481 | 0.00 | 0.81 | 0.19 | 0.00 | T | 25 | 0.81 |
| 449 | 241 | 0 | 54 | 0 | 295 | 0.82 | 0.00 | 0.18 | 0.00 | A | 30 | 0.82 |
| 450 | 0 | 184 | 0 | 202 | 386 | 0.00 | 0.48 | 0.00 | 0.52 | C | 12 | 0.52 |
| 451 | 0 | 133 | 0 | 0 | 133 | 0.00 | 1.00 | 0.00 | 0.00 | T | 12 | 1.00 |
| 452 | 306 | 0 | 112 | 14 | 432 | 0.71 | 0.00 | 0.26 | 0.03 | A | 12 | 0.71 |
| 453 | 0 | 130 | 76 | 157 | 363 | 0.00 | 0.36 | 0.21 | 0.43 | C | 21 | 0.43 |
| 454 | 0 | 273 | 116 | 0 | 389 | 0.00 | 0.70 | 0.30 | 0.00 | T | 21 | 0.70 |
| 455 | 114 | 379 | 51 | 18 | 562 | 0.20 | 0.67 | 0.09 | 0.03 | T | 28 | 0.67 |
| 456 | 0 | 0 | 40 | 270 | 310 | 0.00 | 0.00 | 0.13 | 0.87 | C | 24 | 0.87 |
| 457 | 149 | 49 | 35 | 0 | 233 | 0.64 | 0.21 | 0.15 | 0.00 | A | 28 | 0.64 |
| 458 | 151 | 50 | 53 | 42 | 296 | 0.51 | 0.17 | 0.18 | 0.14 | N | 22 | 0.51 |
| 459 | 92 | 268 | 66 | 42 | 468 | 0.20 | 0.57 | 0.14 | 0.09 | T | 28 | 0.57 |
| 460 | 132 | 394 | 3 | 79 | 608 | 0.22 | 0.65 | 0.00 | 0.13 | T | 30 | 0.65 |
| 461 | 0 | 0 | 3 | 209 | 212 | 0.00 | 0.00 | 0.01 | 0.99 | C | 27 | 0.99 |
| 462 | 259 | 0 | 0 | 0 | 259 | 1.00 | 0.00 | 0.00 | 0.00 | A | 28 | 1.00 |
| 463 | 0 | 159 | 70 | 138 | 367 | 0.00 | 0.43 | 0.19 | 0.38 | T | 20 | 0.43 |
| 464 | 95 | 381 | 43 | 0 | 519 | 0.18 | 0.73 | 0.08 | 0.00 | T | 20 | 0.73 |
| 465 | 0 | 433 | 22 | 73 | 528 | 0.00 | 0.82 | 0.04 | 0.14 | T | 28 | 0.82 |
| 466 | 117 | 369 | 0 | 0 | 486 | 0.24 | 0.76 | 0.00 | 0.00 | T | 20 | 0.76 |
| 467 | 0 | 70 | 0 | 192 | 262 | 0.00 | 0.27 | 0.00 | 0.73 | C | 21 | 0.73 |
| 468 | 127 | 69 | 140 | 0 | 336 | 0.38 | 0.21 | 0.42 | 0.00 | G | 10 | 0.42 |
| 469 | 129 | 0 | 0 | 117 | 246 | 0.52 | 0.00 | 0.00 | 0.48 | A | 10 | 0.52 |
| 470 | 0 | 154 | 40 | 146 | 340 | 0.00 | 0.45 | 0.12 | 0.43 | T | 19 | 0.45 |
| 471 | 189 | 0 | 0 | 0 | 189 | 1.00 | 0.00 | 0.00 | 0.00 | A | 17 | 1.00 |
| 472 | 108 | 91 | 170 | 55 | 424 | 0.25 | 0.21 | 0.40 | 0.13 | N | 28 | 0.40 |
| 473 | 0 | 64 | 0 | 177 | 241 | 0.00 | 0.27 | 0.00 | 0.73 | C | 27 | 0.73 |
| 474 | 56 | 193 | 87 | 0 | 336 | 0.17 | 0.57 | 0.26 | 0.00 | T | 14 | 0.57 |
| 475 | 0 | 267 | 6 | 112 | 385 | 0.00 | 0.69 | 0.02 | 0.29 | T | 27 | 0.69 |
| 476 | 0 | 312 | 0 | 112 | 424 | 0.00 | 0.74 | 0.00 | 0.26 | T | 28 | 0.74 |
| 477 | 90 | 0 | 172 | 128 | 390 | 0.23 | 0.00 | 0.44 | 0.33 | G | 20 | 0.44 |
| 478 | 172 | 33 | 0 | 0 | 205 | 0.84 | 0.16 | 0.00 | 0.00 | A | 23 | 0.84 |
| 479 | 0 | 0 | 39 | 86 | 125 | 0.00 | 0.00 | 0.31 | 0.69 | C | 28 | 0.69 |
| 480 | 207 | 3 | 0 | 65 | 275 | 0.75 | 0.01 | 0.00 | 0.24 | A | 28 | 0.75 |
| 481 | 95 | 31 | 170 | 0 | 296 | 0.32 | 0.10 | 0.57 | 0.00 | G | 28 | 0.57 |
| 482 | 0 | 28 | 62 | 174 | 264 | 0.00 | 0.11 | 0.23 | 0.66 | C | 34 | 0.66 |
| 483 | 96 | 0 | 63 | 0 | 159 | 0.60 | 0.00 | 0.40 | 0.00 | A | 34 | 0.60 |
| 484 | 0 | 274 | 0 | 79 | 353 | 0.00 | 0.78 | 0.00 | 0.22 | T | 27 | 0.78 |
| 485 | 45 | 284 | 57 | 63 | 449 | 0.10 | 0.63 | 0.13 | 0.14 | T | 27 | 0.63 |
| 486 | 52 | 265 | 61 | 57 | 435 | 0.12 | 0.61 | 0.14 | 0.13 | T | 22 | 0.61 |
| 487 | 80 | 0 | 0 | 22 | 102 | 0.78 | 0.00 | 0.00 | 0.22 | A | 14 | 0.78 |
| 488 | 230 | 67 | 89 | 32 | 418 | 0.55 | 0.16 | 0.21 | 0.08 | A | 22 | 0.55 |
| 489 | 0 | 0 | 178 | 79 | 257 | 0.00 | 0.00 | 0.69 | 0.31 | G | 27 | 0.69 |
| 490 | 71 | 191 | 0 | 18 | 280 | 0.25 | 0.68 | 0.00 | 0.06 | T | 27 | 0.68 |
| 491 | 0 | 0 | 317 | 0 | 317 | 0.00 | 0.00 | 1.00 | 0.00 | G | 30 | 1.00 |
| 492 | 36 | 301 | 0 | 2 | 339 | 0.11 | 0.89 | 0.00 | 0.01 | T | 27 | 0.89 |
| 493 | 77 | 253 | 0 | 30 | 360 | 0.21 | 0.70 | 0.00 | 0.08 | T | 15 | 0.70 |
| 494 | 130 | 283 | 163 | 0 | 576 | 0.23 | 0.49 | 0.28 | 0.00 | T | 9 | 0.49 |
| 495 | 0 | 297 | 46 | 24 | 367 | 0.00 | 0.81 | 0.13 | 0.07 | T | 16 | 0.81 |
| 496 | 92 | 343 | 0 | 0 | 435 | 0.21 | 0.79 | 0.00 | 0.00 | T | 27 | 0.79 |
| 497 | 0 | 0 | 0 | 192 | 192 | 0.00 | 0.00 | 0.00 | 1.00 | C | 16 | 1.00 |
| 498 | 105 | 88 | 118 | 0 | 311 | 0.34 | 0.28 | 0.38 | 0.00 | G | 8 | 0.38 |
| 499 | 34 | 0 | 0 | 160 | 194 | 0.18 | 0.00 | 0.00 | 0.82 | C | 16 | 0.82 |
| 500 | 45 | 285 | 0 | 0 | 330 | 0.14 | 0.86 | 0.00 | 0.00 | T | 30 | 0.86 |
| 501 | 29 | 0 | 272 | 0 | 301 | 0.10 | 0.00 | 0.90 | 0.00 | G | 30 | 0.90 |
| 502 | 26 | 71 | 108 | 158 | 363 | 0.07 | 0.20 | 0.30 | 0.44 | C | 31 | 0.44 |
| 503 | 0 | 54 | 0 | 130 | 184 | 0.00 | 0.29 | 0.00 | 0.71 | C | 30 | 0.71 |
| 504 | 163 | 0 | 15 | 0 | 178 | 0.92 | 0.00 | 0.08 | 0.00 | A | 32 | 0.92 |
| 505 | 0 | 240 | 38 | 23 | 301 | 0.00 | 0.80 | 0.13 | 0.08 | T | 20 | 0.80 |
| 506 | 242 | 0 | 24 | 29 | 295 | 0.82 | 0.00 | 0.08 | 0.10 | A | 34 | 0.82 |
| 507 | 0 | 132 | 29 | 174 | 335 | 0.00 | 0.39 | 0.09 | 0.52 | C | 28 | 0.52 |
| 508 | 0 | 216 | 0 | 119 | 335 | 0.00 | 0.64 | 0.00 | 0.36 | T | 27 | 0.64 |
| 509 | 224 | 51 | 87 | 119 | 481 | 0.47 | 0.11 | 0.18 | 0.25 | A | 27 | 0.47 |
| 510 | 0 | 0 | 53 | 209 | 262 | 0.00 | 0.00 | 0.20 | 0.80 | C | 21 | 0.80 |
| 511 | 0 | 136 | 24 | 71 | 231 | 0.00 | 0.59 | 0.10 | 0.31 | T | 26 | 0.59 |
| 512 | 312 | 49 | 0 | 43 | 404 | 0.77 | 0.12 | 0.00 | 0.11 | A | 21 | 0.77 |
| 513 | 0 | 0 | 130 | 164 | 294 | 0.00 | 0.00 | 0.44 | 0.56 | C | 12 | 0.56 |
| 514 | 65 | 57 | 0 | 141 | 263 | 0.25 | 0.22 | 0.00 | 0.54 | C | 15 | 0.54 |
| 515 | 0 | 240 | 0 | 87 | 327 | 0.00 | 0.73 | 0.00 | 0.27 | T | 10 | 0.73 |
| 516 | 239 | 0 | 53 | 87 | 379 | 0.63 | 0.00 | 0.14 | 0.23 | A | 25 | 0.63 |
| 517 | 98 | 313 | 0 | 0 | 411 | 0.24 | 0.76 | 0.00 | 0.00 | T | 30 | 0.76 |
| 518 | 0 | 0 | 182 | 0 | 182 | 0.00 | 0.00 | 1.00 | 0.00 | G | 29 | 1.00 |
| 519 | 223 | 0 | 0 | 0 | 223 | 1.00 | 0.00 | 0.00 | 0.00 | A | 22 | 1.00 |
| 520 | 0 | 50 | 102 | 128 | 280 | 0.00 | 0.18 | 0.36 | 0.46 | C | 13 | 0.46 |
| 521 | 97 | 0 | 260 | 0 | 357 | 0.27 | 0.00 | 0.73 | 0.00 | G | 21 | 0.73 |
| 522 | 0 | 248 | 0 | 63 | 311 | 0.00 | 0.80 | 0.00 | 0.20 | T | 27 | 0.80 |
| 523 | 70 | 65 | 0 | 224 | 359 | 0.19 | 0.18 | 0.00 | 0.62 | C | 27 | 0.62 |
| 524 | 58 | 0 | 11 | 174 | 243 | 0.24 | 0.00 | 0.05 | 0.72 | C | 16 | 0.72 |
| 525 | 0 | 65 | 93 | 19 | 177 | 0.00 | 0.37 | 0.53 | 0.11 | G | 8 | 0.53 |
| 526 | 210 | 28 | 0 | 0 | 238 | 0.88 | 0.12 | 0.00 | 0.00 | A | 16 | 0.88 |
| 527 | 0 | 71 | 24 | 125 | 220 | 0.00 | 0.32 | 0.11 | 0.57 | C | 28 | 0.57 |
| 528 | 223 | 0 | 88 | 49 | 360 | 0.62 | 0.00 | 0.24 | 0.14 | A | 20 | 0.62 |
| 529 | 0 | 141 | 49 | 0 | 190 | 0.00 | 0.74 | 0.26 | 0.00 | T | 13 | 0.74 |
| 530 | 232 | 0 | 43 | 36 | 311 | 0.75 | 0.00 | 0.14 | 0.12 | A | 16 | 0.75 |
| 531 | 117 | 159 | 0 | 0 | 276 | 0.42 | 0.58 | 0.00 | 0.00 | T | 11 | 0.58 |
| 532 | 30 | 22 | 67 | 138 | 257 | 0.12 | 0.09 | 0.26 | 0.54 | C | 21 | 0.54 |
| 533 | 54 | 0 | 248 | 22 | 324 | 0.17 | 0.00 | 0.77 | 0.07 | G | 27 | 0.77 |
| 534 | 0 | 205 | 0 | 13 | 218 | 0.00 | 0.94 | 0.00 | 0.06 | T | 27 | 0.94 |
| 535 | 119 | 223 | 71 | 0 | 413 | 0.29 | 0.54 | 0.17 | 0.00 | T | 20 | 0.54 |
| 536 | 0 | 0 | 222 | 0 | 222 | 0.00 | 0.00 | 1.00 | 0.00 | G | 26 | 1.00 |
| 537 | 27 | 38 | 67 | 126 | 258 | 0.10 | 0.15 | 0.26 | 0.49 | C | 11 | 0.49 |
| 538 | 61 | 57 | 0 | 0 | 118 | 0.52 | 0.48 | 0.00 | 0.00 | A | 11 | 0.52 |
| 539 | 2 | 94 | 252 | 0 | 348 | 0.01 | 0.27 | 0.72 | 0.00 | G | 9 | 0.72 |
| 540 | 89 | 165 | 0 | 25 | 279 | 0.32 | 0.59 | 0.00 | 0.09 | T | 26 | 0.59 |
| 541 | 76 | 228 | 72 | 25 | 401 | 0.19 | 0.57 | 0.18 | 0.06 | T | 18 | 0.57 |
| 542 | 0 | 0 | 0 | 121 | 121 | 0.00 | 0.00 | 0.00 | 1.00 | C | 14 | 1.00 |
| 543 | 133 | 0 | 50 | 0 | 183 | 0.73 | 0.00 | 0.27 | 0.00 | A | 8 | 0.73 |
| 544 | 20 | 195 | 59 | 0 | 274 | 0.07 | 0.71 | 0.22 | 0.00 | T | 16 | 0.71 |
| 545 | 0 | 79 | 0 | 161 | 240 | 0.00 | 0.33 | 0.00 | 0.67 | C | 27 | 0.67 |
| 546 | 61 | 0 | 237 | 0 | 298 | 0.20 | 0.00 | 0.80 | 0.00 | G | 27 | 0.80 |
| 547 | 6 | 0 | 0 | 181 | 187 | 0.03 | 0.00 | 0.00 | 0.97 | C | 28 | 0.97 |
| 548 | 82 | 276 | 11 | 0 | 369 | 0.22 | 0.75 | 0.03 | 0.00 | T | 20 | 0.75 |
| 549 | 0 | 0 | 89 | 179 | 268 | 0.00 | 0.00 | 0.33 | 0.67 | C | 19 | 0.67 |
| 550 | 43 | 46 | 0 | 176 | 265 | 0.16 | 0.17 | 0.00 | 0.66 | C | 17 | 0.66 |
| 551 | 56 | 35 | 197 | 0 | 288 | 0.19 | 0.12 | 0.68 | 0.00 | G | 32 | 0.68 |
| 552 | 64 | 50 | 0 | 174 | 288 | 0.22 | 0.17 | 0.00 | 0.60 | C | 32 | 0.60 |
| 553 | 21 | 40 | 0 | 222 | 283 | 0.07 | 0.14 | 0.00 | 0.78 | C | 31 | 0.78 |
| 554 | 205 | 0 | 35 | 0 | 240 | 0.85 | 0.00 | 0.15 | 0.00 | A | 30 | 0.85 |
| 555 | 194 | 0 | 43 | 32 | 269 | 0.72 | 0.00 | 0.16 | 0.12 | A | 30 | 0.72 |
| 556 | 0 | 266 | 0 | 12 | 278 | 0.00 | 0.96 | 0.00 | 0.04 | T | 31 | 0.96 |
| 557 | 252 | 0 | 0 | 24 | 276 | 0.91 | 0.00 | 0.00 | 0.09 | A | 17 | 0.91 |
| 558 | 0 | 52 | 35 | 0 | 87 | 0.00 | 0.60 | 0.40 | 0.00 | T | 12 | 0.60 |
| 559 | 0 | 0 | 0 | 136 | 136 | 0.00 | 0.00 | 0.00 | 1.00 | C | 10 | 1.00 |
| 560 | 82 | 24 | 68 | 70 | 244 | 0.34 | 0.10 | 0.28 | 0.29 | N | 11 | 0.34 |
| 561 | 59 | 81 | 112 | 0 | 252 | 0.23 | 0.32 | 0.44 | 0.00 | G | 11 | 0.44 |
| 562 | 0 | 28 | 0 | 134 | 162 | 0.00 | 0.17 | 0.00 | 0.83 | C | 21 | 0.83 |
| 563 | 59 | 169 | 78 | 0 | 306 | 0.19 | 0.55 | 0.25 | 0.00 | T | 33 | 0.55 |
| 564 | 46 | 70 | 156 | 63 | 335 | 0.14 | 0.21 | 0.47 | 0.19 | N | 22 | 0.47 |
| 565 | 0 | 148 | 0 | 74 | 222 | 0.00 | 0.67 | 0.00 | 0.33 | T | 18 | 0.67 |
| 566 | 24 | 0 | 171 | 21 | 216 | 0.11 | 0.00 | 0.79 | 0.10 | G | 23 | 0.79 |
| 567 | 91 | 274 | 63 | 24 | 452 | 0.20 | 0.61 | 0.14 | 0.05 | T | 34 | 0.61 |
| 568 | 30 | 0 | 210 | 52 | 292 | 0.10 | 0.00 | 0.72 | 0.18 | G | 34 | 0.72 |
| 569 | 53 | 213 | 0 | 0 | 266 | 0.20 | 0.80 | 0.00 | 0.00 | T | 30 | 0.80 |
| 570 | 63 | 0 | 0 | 166 | 229 | 0.28 | 0.00 | 0.00 | 0.72 | C | 30 | 0.72 |
| 571 | 74 | 60 | 21 | 188 | 343 | 0.22 | 0.17 | 0.06 | 0.55 | C | 17 | 0.55 |
| 572 | 62 | 0 | 15 | 0 | 77 | 0.81 | 0.00 | 0.19 | 0.00 | A | 25 | 0.81 |
| 573 | 35 | 198 | 7 | 43 | 283 | 0.12 | 0.70 | 0.02 | 0.15 | T | 22 | 0.70 |
| 574 | 0 | 0 | 224 | 4 | 228 | 0.00 | 0.00 | 0.98 | 0.02 | G | 26 | 0.98 |
| 575 | 162 | 25 | 0 | 0 | 187 | 0.87 | 0.13 | 0.00 | 0.00 | A | 30 | 0.87 |
| 576 | 0 | 0 | 59 | 224 | 283 | 0.00 | 0.00 | 0.21 | 0.79 | C | 32 | 0.79 |
| 577 | 0 | 54 | 0 | 211 | 265 | 0.00 | 0.20 | 0.00 | 0.80 | C | 36 | 0.80 |
| 578 | 69 | 202 | 0 | 0 | 271 | 0.25 | 0.75 | 0.00 | 0.00 | T | 34 | 0.75 |
| 579 | 0 | 0 | 59 | 188 | 247 | 0.00 | 0.00 | 0.24 | 0.76 | C | 34 | 0.76 |
| 580 | 28 | 173 | 0 | 0 | 201 | 0.14 | 0.86 | 0.00 | 0.00 | T | 37 | 0.86 |
| 581 | 0 | 0 | 0 | 148 | 148 | 0.00 | 0.00 | 0.00 | 1.00 | C | 28 | 1.00 |
| 582 | 0 | 0 | 187 | 119 | 306 | 0.00 | 0.00 | 0.61 | 0.39 | G | 12 | 0.61 |
| 583 | 123 | 0 | 0 | 22 | 145 | 0.85 | 0.00 | 0.00 | 0.15 | A | 17 | 0.85 |
| 584 | 78 | 190 | 25 | 75 | 368 | 0.21 | 0.52 | 0.07 | 0.20 | T | 22 | 0.52 |
| 585 | 181 | 0 | 32 | 39 | 252 | 0.72 | 0.00 | 0.13 | 0.15 | A | 35 | 0.72 |
| 586 | 235 | 70 | 36 | 19 | 360 | 0.65 | 0.19 | 0.10 | 0.05 | A | 28 | 0.65 |
| 587 | 0 | 162 | 69 | 61 | 292 | 0.00 | 0.55 | 0.24 | 0.21 | T | 22 | 0.55 |
| 588 | 0 | 262 | 0 | 0 | 262 | 0.00 | 1.00 | 0.00 | 0.00 | T | 26 | 1.00 |
| 589 | 240 | 0 | 44 | 88 | 372 | 0.65 | 0.00 | 0.12 | 0.24 | A | 12 | 0.65 |
| 590 | 0 | 152 | 95 | 0 | 247 | 0.00 | 0.62 | 0.38 | 0.00 | T | 7 | 0.62 |
| 591 | 23 | 0 | 0 | 98 | 121 | 0.19 | 0.00 | 0.00 | 0.81 | C | 7 | 0.81 |
| 592 | 9 | 41 | 184 | 0 | 234 | 0.04 | 0.18 | 0.79 | 0.00 | G | 15 | 0.79 |
| 593 | 170 | 0 | 184 | 21 | 375 | 0.45 | 0.00 | 0.49 | 0.06 | G | 17 | 0.49 |
| 594 | 122 | 216 | 26 | 54 | 418 | 0.29 | 0.52 | 0.06 | 0.13 | T | 8 | 0.52 |
| 595 | 0 | 298 | 11 | 29 | 338 | 0.00 | 0.88 | 0.03 | 0.09 | T | 27 | 0.88 |
| 596 | 142 | 358 | 5 | 7 | 512 | 0.28 | 0.70 | 0.01 | 0.01 | T | 33 | 0.70 |
| 597 | 0 | 0 | 0 | 136 | 136 | 0.00 | 0.00 | 0.00 | 1.00 | C | 32 | 1.00 |
| 598 | 108 | 0 | 106 | 0 | 214 | 0.50 | 0.00 | 0.50 | 0.00 | A | 16 | 0.50 |
| 599 | 0 | 200 | 0 | 93 | 293 | 0.00 | 0.68 | 0.00 | 0.32 | T | 16 | 0.68 |
| 600 | 262 | 0 | 0 | 0 | 262 | 1.00 | 0.00 | 0.00 | 0.00 | A | 21 | 1.00 |
| 601 | 0 | 75 | 94 | 100 | 269 | 0.00 | 0.28 | 0.35 | 0.37 | C | 27 | 0.37 |
| 602 | 0 | 51 | 25 | 162 | 238 | 0.00 | 0.21 | 0.11 | 0.68 | C | 22 | 0.68 |
| 603 | 134 | 141 | 17 | 73 | 365 | 0.37 | 0.39 | 0.05 | 0.20 | T | 24 | 0.39 |
| 604 | 0 | 227 | 0 | 78 | 305 | 0.00 | 0.74 | 0.00 | 0.26 | T | 21 | 0.74 |
| 605 | 105 | 0 | 0 | 199 | 304 | 0.35 | 0.00 | 0.00 | 0.65 | C | 33 | 0.65 |
| 606 | 51 | 40 | 160 | 0 | 251 | 0.20 | 0.16 | 0.64 | 0.00 | G | 33 | 0.64 |
| 607 | 0 | 0 | 0 | 98 | 98 | 0.00 | 0.00 | 0.00 | 1.00 | C | 34 | 1.00 |
| 608 | 64 | 244 | 49 | 0 | 357 | 0.18 | 0.68 | 0.14 | 0.00 | T | 31 | 0.68 |
| 609 | 48 | 0 | 48 | 160 | 256 | 0.19 | 0.00 | 0.19 | 0.62 | C | 30 | 0.62 |
| 610 | 18 | 140 | 182 | 84 | 424 | 0.04 | 0.33 | 0.43 | 0.20 | G | 19 | 0.43 |
| 611 | 0 | 0 | 116 | 47 | 163 | 0.00 | 0.00 | 0.71 | 0.29 | G | 21 | 0.71 |
| 612 | 201 | 99 | 0 | 56 | 356 | 0.56 | 0.28 | 0.00 | 0.16 | A | 26 | 0.56 |
| 613 | 0 | 18 | 211 | 0 | 229 | 0.00 | 0.08 | 0.92 | 0.00 | G | 26 | 0.92 |
| 614 | 0 | 0 | 0 | 78 | 78 | 0.00 | 0.00 | 0.00 | 1.00 | C | 27 | 1.00 |
| 615 | 273 | 0 | 140 | 0 | 413 | 0.66 | 0.00 | 0.34 | 0.00 | A | 16 | 0.66 |
| 616 | 0 | 0 | 117 | 21 | 138 | 0.00 | 0.00 | 0.85 | 0.15 | G | 12 | 0.85 |
| 617 | 0 | 0 | 117 | 0 | 117 | 0.00 | 0.00 | 1.00 | 0.00 | G | 8 | 1.00 |
| 618 | 33 | 136 | 0 | 55 | 224 | 0.15 | 0.61 | 0.00 | 0.25 | T | 13 | 0.61 |
| 619 | 45 | 59 | 254 | 63 | 421 | 0.11 | 0.14 | 0.60 | 0.15 | G | 13 | 0.60 |
| 620 | 67 | 40 | 135 | 0 | 242 | 0.28 | 0.17 | 0.56 | 0.00 | G | 10 | 0.56 |
| 621 | 56 | 176 | 0 | 50 | 282 | 0.20 | 0.62 | 0.00 | 0.18 | T | 16 | 0.62 |
| 622 | 20 | 16 | 160 | 74 | 270 | 0.07 | 0.06 | 0.59 | 0.27 | G | 27 | 0.59 |
| 623 | 165 | 34 | 0 | 14 | 213 | 0.77 | 0.16 | 0.00 | 0.07 | A | 27 | 0.77 |
| 624 | 6 | 0 | 220 | 21 | 247 | 0.02 | 0.00 | 0.89 | 0.09 | G | 27 | 0.89 |
| 625 | 0 | 117 | 0 | 16 | 133 | 0.00 | 0.88 | 0.00 | 0.12 | T | 22 | 0.88 |
| 626 | 183 | 0 | 107 | 26 | 316 | 0.58 | 0.00 | 0.34 | 0.08 | A | 17 | 0.58 |
| 627 | 0 | 157 | 0 | 64 | 221 | 0.00 | 0.71 | 0.00 | 0.29 | T | 7 | 0.71 |
| 628 | 95 | 20 | 33 | 0 | 148 | 0.64 | 0.14 | 0.22 | 0.00 | A | 16 | 0.64 |
| 629 | 175 | 5 | 62 | 0 | 242 | 0.72 | 0.02 | 0.26 | 0.00 | A | 17 | 0.72 |
| 630 | 0 | 46 | 92 | 47 | 185 | 0.00 | 0.25 | 0.50 | 0.25 | G | 11 | 0.50 |
| 631 | 183 | 0 | 0 | 0 | 183 | 1.00 | 0.00 | 0.00 | 0.00 | A | 21 | 1.00 |
| 632 | 0 | 178 | 0 | 36 | 214 | 0.00 | 0.83 | 0.00 | 0.17 | T | 27 | 0.83 |
| 633 | 198 | 33 | 57 | 40 | 328 | 0.60 | 0.10 | 0.17 | 0.12 | A | 27 | 0.60 |
| 634 | 0 | 33 | 0 | 124 | 157 | 0.00 | 0.21 | 0.00 | 0.79 | C | 22 | 0.79 |
| 635 | 58 | 61 | 115 | 0 | 234 | 0.25 | 0.26 | 0.49 | 0.00 | G | 28 | 0.49 |
| 636 | 43 | 233 | 0 | 46 | 322 | 0.13 | 0.72 | 0.00 | 0.14 | T | 21 | 0.72 |
| 637 | 15 | 0 | 91 | 0 | 106 | 0.14 | 0.00 | 0.86 | 0.00 | G | 7 | 0.86 |
| 638 | 60 | 0 | 86 | 190 | 336 | 0.18 | 0.00 | 0.26 | 0.57 | C | 15 | 0.57 |
| 639 | 0 | 310 | 60 | 6 | 376 | 0.00 | 0.82 | 0.16 | 0.02 | T | 7 | 0.82 |
| 640 | 230 | 0 | 57 | 0 | 287 | 0.80 | 0.00 | 0.20 | 0.00 | A | 21 | 0.80 |
| 641 | 114 | 251 | 0 | 40 | 405 | 0.28 | 0.62 | 0.00 | 0.10 | T | 31 | 0.62 |
| 642 | 82 | 0 | 0 | 134 | 216 | 0.38 | 0.00 | 0.00 | 0.62 | C | 27 | 0.62 |
| 643 | 86 | 0 | 143 | 0 | 229 | 0.38 | 0.00 | 0.62 | 0.00 | G | 21 | 0.62 |
| 644 | 0 | 114 | 30 | 111 | 255 | 0.00 | 0.45 | 0.12 | 0.44 | T | 11 | 0.45 |
| 645 | 144 | 15 | 61 | 67 | 287 | 0.50 | 0.05 | 0.21 | 0.23 | A | 11 | 0.50 |
| 646 | 193 | 4 | 15 | 0 | 212 | 0.91 | 0.02 | 0.07 | 0.00 | A | 26 | 0.91 |
| 647 | 0 | 76 | 0 | 207 | 283 | 0.00 | 0.27 | 0.00 | 0.73 | C | 22 | 0.73 |
| 648 | 143 | 113 | 1 | 144 | 401 | 0.36 | 0.28 | 0.00 | 0.36 | C | 18 | 0.36 |
| 649 | 31 | 5 | 177 | 106 | 319 | 0.10 | 0.02 | 0.55 | 0.33 | G | 23 | 0.55 |
| 650 | 63 | 0 | 196 | 0 | 259 | 0.24 | 0.00 | 0.76 | 0.00 | G | 28 | 0.76 |
| 651 | 0 | 51 | 224 | 81 | 356 | 0.00 | 0.14 | 0.63 | 0.23 | G | 28 | 0.63 |
| 652 | 113 | 0 | 64 | 0 | 177 | 0.64 | 0.00 | 0.36 | 0.00 | A | 30 | 0.64 |
| 653 | 116 | 141 | 0 | 0 | 257 | 0.45 | 0.55 | 0.00 | 0.00 | T | 16 | 0.55 |
| 654 | 0 | 0 | 139 | 105 | 244 | 0.00 | 0.00 | 0.57 | 0.43 | G | 19 | 0.57 |
| 655 | 55 | 186 | 0 | 0 | 241 | 0.23 | 0.77 | 0.00 | 0.00 | T | 13 | 0.77 |
| 656 | 47 | 0 | 0 | 34 | 81 | 0.58 | 0.00 | 0.00 | 0.42 | A | 11 | 0.58 |
| 657 | 47 | 63 | 189 | 70 | 369 | 0.13 | 0.17 | 0.51 | 0.19 | G | 21 | 0.51 |
| 658 | 0 | 45 | 0 | 126 | 171 | 0.00 | 0.26 | 0.00 | 0.74 | C | 19 | 0.74 |
| 659 | 165 | 57 | 0 | 71 | 293 | 0.56 | 0.19 | 0.00 | 0.24 | A | 25 | 0.56 |
| 660 | 0 | 0 | 161 | 85 | 246 | 0.00 | 0.00 | 0.65 | 0.35 | G | 27 | 0.65 |
| 661 | 44 | 100 | 0 | 72 | 216 | 0.20 | 0.46 | 0.00 | 0.33 | T | 17 | 0.46 |
| 662 | 0 | 27 | 267 | 37 | 331 | 0.00 | 0.08 | 0.81 | 0.11 | G | 22 | 0.81 |
| 663 | 101 | 0 | 0 | 0 | 101 | 1.00 | 0.00 | 0.00 | 0.00 | A | 13 | 1.00 |
| 664 | 113 | 63 | 0 | 48 | 224 | 0.50 | 0.28 | 0.00 | 0.21 | A | 13 | 0.50 |
| 665 | 0 | 0 | 82 | 58 | 140 | 0.00 | 0.00 | 0.59 | 0.41 | G | 9 | 0.59 |
| 666 | 161 | 0 | 78 | 0 | 239 | 0.67 | 0.00 | 0.33 | 0.00 | A | 16 | 0.67 |
| 667 | 0 | 144 | 0 | 43 | 187 | 0.00 | 0.77 | 0.00 | 0.23 | T | 16 | 0.77 |
| 668 | 0 | 0 | 278 | 69 | 347 | 0.00 | 0.00 | 0.80 | 0.20 | G | 17 | 0.80 |
| 669 | 6 | 157 | 0 | 0 | 163 | 0.04 | 0.96 | 0.00 | 0.00 | T | 31 | 0.96 |
| 670 | 0 | 36 | 112 | 49 | 197 | 0.00 | 0.18 | 0.57 | 0.25 | G | 21 | 0.57 |
| 671 | 0 | 80 | 0 | 0 | 80 | 0.00 | 1.00 | 0.00 | 0.00 | T | 11 | 1.00 |
| 672 | 133 | 0 | 62 | 27 | 222 | 0.60 | 0.00 | 0.28 | 0.12 | A | 22 | 0.60 |
| 673 | 0 | 0 | 150 | 50 | 200 | 0.00 | 0.00 | 0.75 | 0.25 | G | 22 | 0.75 |
| 674 | 173 | 83 | 0 | 0 | 256 | 0.68 | 0.32 | 0.00 | 0.00 | A | 16 | 0.68 |
| 675 | 167 | 0 | 5 | 50 | 222 | 0.75 | 0.00 | 0.02 | 0.23 | A | 22 | 0.75 |
| 676 | 168 | 179 | 5 | 12 | 364 | 0.46 | 0.49 | 0.01 | 0.03 | T | 21 | 0.49 |
| 677 | 166 | 0 | 63 | 0 | 229 | 0.72 | 0.00 | 0.28 | 0.00 | A | 22 | 0.72 |
| 678 | 72 | 250 | 0 | 3 | 325 | 0.22 | 0.77 | 0.00 | 0.01 | T | 22 | 0.77 |
| 679 | 0 | 0 | 151 | 19 | 170 | 0.00 | 0.00 | 0.89 | 0.11 | G | 33 | 0.89 |
| 680 | 231 | 136 | 0 | 0 | 367 | 0.63 | 0.37 | 0.00 | 0.00 | A | 31 | 0.63 |
| 681 | 0 | 140 | 20 | 13 | 173 | 0.00 | 0.81 | 0.12 | 0.08 | T | 22 | 0.81 |
| 682 | 0 | 0 | 40 | 81 | 121 | 0.00 | 0.00 | 0.33 | 0.67 | C | 12 | 0.67 |
| 683 | 116 | 46 | 0 | 0 | 162 | 0.72 | 0.28 | 0.00 | 0.00 | A | 13 | 0.72 |
| 684 | 180 | 0 | 140 | 0 | 320 | 0.56 | 0.00 | 0.44 | 0.00 | A | 7 | 0.56 |
| 685 | 0 | 0 | 161 | 64 | 225 | 0.00 | 0.00 | 0.72 | 0.28 | G | 21 | 0.72 |
| 686 | 114 | 158 | 0 | 0 | 272 | 0.42 | 0.58 | 0.00 | 0.00 | T | 22 | 0.58 |
| 687 | 166 | 54 | 73 | 90 | 383 | 0.43 | 0.14 | 0.19 | 0.23 | N | 18 | 0.43 |
| 688 | 0 | 0 | 100 | 60 | 160 | 0.00 | 0.00 | 0.62 | 0.38 | G | 26 | 0.62 |
| 689 | 0 | 165 | 0 | 22 | 187 | 0.00 | 0.88 | 0.00 | 0.12 | T | 26 | 0.88 |
| 690 | 259 | 0 | 111 | 0 | 370 | 0.70 | 0.00 | 0.30 | 0.00 | A | 20 | 0.70 |
| 691 | 0 | 250 | 0 | 6 | 256 | 0.00 | 0.98 | 0.00 | 0.02 | T | 28 | 0.98 |
| 692 | 0 | 104 | 173 | 35 | 312 | 0.00 | 0.33 | 0.55 | 0.11 | G | 34 | 0.55 |
| 693 | 67 | 45 | 140 | 10 | 262 | 0.26 | 0.17 | 0.53 | 0.04 | G | 33 | 0.53 |
| 694 | 94 | 161 | 0 | 1 | 256 | 0.37 | 0.63 | 0.00 | 0.00 | T | 27 | 0.63 |
| 695 | 91 | 0 | 0 | 31 | 122 | 0.75 | 0.00 | 0.00 | 0.25 | A | 22 | 0.75 |
| 696 | 0 | 0 | 200 | 0 | 200 | 0.00 | 0.00 | 1.00 | 0.00 | G | 18 | 1.00 |
| 697 | 0 | 55 | 0 | 180 | 235 | 0.00 | 0.23 | 0.00 | 0.77 | C | 22 | 0.77 |
| 698 | 118 | 130 | 0 | 96 | 344 | 0.34 | 0.38 | 0.00 | 0.28 | T | 11 | 0.38 |
| 699 | 87 | 0 | 56 | 0 | 143 | 0.61 | 0.00 | 0.39 | 0.00 | A | 12 | 0.61 |
| 700 | 0 | 190 | 37 | 46 | 273 | 0.00 | 0.70 | 0.14 | 0.17 | T | 21 | 0.70 |
| 701 | 212 | 0 | 9 | 0 | 221 | 0.96 | 0.00 | 0.04 | 0.00 | A | 31 | 0.96 |
| 702 | 92 | 162 | 23 | 64 | 341 | 0.27 | 0.48 | 0.07 | 0.19 | T | 19 | 0.48 |
| 703 | 45 | 179 | 23 | 31 | 278 | 0.16 | 0.64 | 0.08 | 0.11 | T | 21 | 0.64 |
| 704 | 13 | 0 | 0 | 0 | 13 | 1.00 | 0.00 | 0.00 | 0.00 | A | 14 | 1.00 |
| 705 | 0 | 0 | 225 | 61 | 286 | 0.00 | 0.00 | 0.79 | 0.21 | G | 12 | 0.79 |
| 706 | 18 | 168 | 0 | 0 | 186 | 0.10 | 0.90 | 0.00 | 0.00 | T | 25 | 0.90 |
| 707 | 3 | 0 | 209 | 0 | 212 | 0.01 | 0.00 | 0.99 | 0.00 | G | 27 | 0.99 |
| 708 | 0 | 130 | 0 | 237 | 367 | 0.00 | 0.35 | 0.00 | 0.65 | C | 17 | 0.65 |
| 709 | 0 | 0 | 14 | 0 | 14 | 0.00 | 0.00 | 1.00 | 0.00 | G | 27 | 1.00 |
| 710 | 157 | 0 | 14 | 91 | 262 | 0.60 | 0.00 | 0.05 | 0.35 | A | 22 | 0.60 |
| 711 | 0 | 0 | 91 | 92 | 183 | 0.00 | 0.00 | 0.50 | 0.50 | C | 19 | 0.50 |
| 712 | 0 | 139 | 0 | 28 | 167 | 0.00 | 0.83 | 0.00 | 0.17 | T | 17 | 0.83 |
| 713 | 181 | 0 | 111 | 62 | 354 | 0.51 | 0.00 | 0.31 | 0.18 | A | 14 | 0.51 |
| 714 | 24 | 216 | 0 | 65 | 305 | 0.08 | 0.71 | 0.00 | 0.21 | T | 22 | 0.71 |
| 715 | 0 | 286 | 0 | 66 | 352 | 0.00 | 0.81 | 0.00 | 0.19 | T | 31 | 0.81 |
| 716 | 0 | 0 | 0 | 38 | 38 | 0.00 | 0.00 | 0.00 | 1.00 | C | 26 | 1.00 |
| 717 | 137 | 0 | 111 | 43 | 291 | 0.47 | 0.00 | 0.38 | 0.15 | A | 20 | 0.47 |
| 718 | 150 | 24 | 0 | 22 | 196 | 0.77 | 0.12 | 0.00 | 0.11 | A | 23 | 0.77 |
| 719 | 0 | 125 | 49 | 53 | 227 | 0.00 | 0.55 | 0.22 | 0.23 | T | 34 | 0.55 |
| 720 | 195 | 31 | 76 | 19 | 321 | 0.61 | 0.10 | 0.24 | 0.06 | A | 30 | 0.61 |
| 721 | 0 | 0 | 160 | 71 | 231 | 0.00 | 0.00 | 0.69 | 0.31 | G | 30 | 0.69 |
| 722 | 10 | 0 | 142 | 47 | 199 | 0.05 | 0.00 | 0.71 | 0.24 | G | 30 | 0.71 |
| 723 | 2 | 54 | 222 | 37 | 315 | 0.01 | 0.17 | 0.70 | 0.12 | G | 21 | 0.70 |
| 724 | 0 | 42 | 0 | 0 | 42 | 0.00 | 1.00 | 0.00 | 0.00 | T | 16 | 1.00 |
| 725 | 131 | 0 | 42 | 111 | 284 | 0.46 | 0.00 | 0.15 | 0.39 | A | 8 | 0.46 |
| 726 | 131 | 30 | 15 | 137 | 313 | 0.42 | 0.10 | 0.05 | 0.44 | C | 15 | 0.44 |
| 727 | 41 | 0 | 45 | 0 | 86 | 0.48 | 0.00 | 0.52 | 0.00 | G | 21 | 0.52 |
| 728 | 0 | 379 | 40 | 21 | 440 | 0.00 | 0.86 | 0.09 | 0.05 | T | 24 | 0.86 |
| 729 | 81 | 0 | 0 | 154 | 235 | 0.34 | 0.00 | 0.00 | 0.66 | C | 20 | 0.66 |
| 730 | 0 | 14 | 139 | 0 | 153 | 0.00 | 0.09 | 0.91 | 0.00 | G | 16 | 0.91 |
| 731 | 112 | 82 | 117 | 0 | 311 | 0.36 | 0.26 | 0.38 | 0.00 | G | 11 | 0.38 |
| 732 | 222 | 0 | 0 | 0 | 222 | 1.00 | 0.00 | 0.00 | 0.00 | A | 15 | 1.00 |
| 733 | 0 | 95 | 0 | 48 | 143 | 0.00 | 0.66 | 0.00 | 0.34 | T | 14 | 0.66 |
| 734 | 0 | 1 | 0 | 85 | 86 | 0.00 | 0.01 | 0.00 | 0.99 | C | 9 | 0.99 |
| 735 | 226 | 18 | 0 | 0 | 244 | 0.93 | 0.07 | 0.00 | 0.00 | A | 25 | 0.93 |
| 736 | 0 | 40 | 0 | 56 | 96 | 0.00 | 0.42 | 0.00 | 0.58 | C | 26 | 0.58 |
| 737 | 45 | 0 | 163 | 53 | 261 | 0.17 | 0.00 | 0.62 | 0.20 | G | 26 | 0.62 |
| 738 | 28 | 232 | 0 | 28 | 288 | 0.10 | 0.81 | 0.00 | 0.10 | T | 29 | 0.81 |
| 739 | 0 | 252 | 0 | 0 | 252 | 0.00 | 1.00 | 0.00 | 0.00 | T | 25 | 1.00 |
| 740 | 13 | 0 | 0 | 0 | 13 | 1.00 | 0.00 | 0.00 | 0.00 | A | 22 | 1.00 |
| 741 | 22 | 90 | 137 | 93 | 342 | 0.06 | 0.26 | 0.40 | 0.27 | G | 10 | 0.40 |
| 742 | 36 | 132 | 0 | 0 | 168 | 0.21 | 0.79 | 0.00 | 0.00 | T | 21 | 0.79 |
| 743 | 17 | 141 | 0 | 18 | 176 | 0.10 | 0.80 | 0.00 | 0.10 | T | 16 | 0.80 |
| 744 | 0 | 0 | 281 | 16 | 297 | 0.00 | 0.00 | 0.95 | 0.05 | G | 18 | 0.95 |
| 745 | 219 | 4 | 0 | 43 | 266 | 0.82 | 0.02 | 0.00 | 0.16 | A | 13 | 0.82 |
| 746 | 165 | 79 | 0 | 0 | 244 | 0.68 | 0.32 | 0.00 | 0.00 | A | 6 | 0.68 |
| 747 | 146 | 58 | 0 | 14 | 218 | 0.67 | 0.27 | 0.00 | 0.06 | A | 6 | 0.67 |
| 748 | 0 | 13 | 189 | 15 | 217 | 0.00 | 0.06 | 0.87 | 0.07 | G | 10 | 0.87 |
| 749 | 0 | 0 | 146 | 38 | 184 | 0.00 | 0.00 | 0.79 | 0.21 | G | 24 | 0.79 |
| 750 | 26 | 254 | 0 | 0 | 280 | 0.09 | 0.91 | 0.00 | 0.00 | T | 31 | 0.91 |
| 751 | 2 | 0 | 187 | 47 | 236 | 0.01 | 0.00 | 0.79 | 0.20 | G | 33 | 0.79 |
| 752 | 22 | 224 | 0 | 0 | 246 | 0.09 | 0.91 | 0.00 | 0.00 | T | 22 | 0.91 |
| 753 | 0 | 0 | 0 | 106 | 106 | 0.00 | 0.00 | 0.00 | 1.00 | C | 10 | 1.00 |
| 754 | 0 | 179 | 3 | 0 | 182 | 0.00 | 0.98 | 0.02 | 0.00 | T | 10 | 0.98 |
| 755 | 172 | 38 | 52 | 62 | 324 | 0.53 | 0.12 | 0.16 | 0.19 | A | 26 | 0.53 |
| 756 | 0 | 0 | 50 | 102 | 152 | 0.00 | 0.00 | 0.33 | 0.67 | C | 19 | 0.67 |
| 757 | 0 | 174 | 0 | 102 | 276 | 0.00 | 0.63 | 0.00 | 0.37 | T | 29 | 0.63 |
| 758 | 30 | 0 | 36 | 0 | 66 | 0.45 | 0.00 | 0.55 | 0.00 | G | 30 | 0.55 |
| 759 | 0 | 0 | 30 | 163 | 193 | 0.00 | 0.00 | 0.16 | 0.84 | C | 27 | 0.84 |
| 760 | 25 | 34 | 29 | 154 | 242 | 0.10 | 0.14 | 0.12 | 0.64 | C | 16 | 0.64 |
| 761 | 0 | 0 | 137 | 161 | 298 | 0.00 | 0.00 | 0.46 | 0.54 | C | 12 | 0.54 |
| 762 | 0 | 156 | 16 | 0 | 172 | 0.00 | 0.91 | 0.09 | 0.00 | T | 25 | 0.91 |
| 763 | 97 | 99 | 0 | 172 | 368 | 0.26 | 0.27 | 0.00 | 0.47 | C | 26 | 0.47 |
| 764 | 90 | 60 | 25 | 0 | 175 | 0.51 | 0.34 | 0.14 | 0.00 | A | 26 | 0.51 |
| 765 | 181 | 0 | 40 | 44 | 265 | 0.68 | 0.00 | 0.15 | 0.17 | A | 26 | 0.68 |
| 766 | 0 | 24 | 0 | 0 | 24 | 0.00 | 1.00 | 0.00 | 0.00 | T | 16 | 1.00 |
| 767 | 177 | 117 | 15 | 26 | 335 | 0.53 | 0.35 | 0.04 | 0.08 | A | 5 | 0.53 |
| 768 | 0 | 0 | 0 | 128 | 128 | 0.00 | 0.00 | 0.00 | 1.00 | C | 19 | 1.00 |
| 769 | 174 | 0 | 0 | 87 | 261 | 0.67 | 0.00 | 0.00 | 0.33 | A | 35 | 0.67 |
| 770 | 0 | 39 | 148 | 0 | 187 | 0.00 | 0.21 | 0.79 | 0.00 | G | 27 | 0.79 |
| 771 | 42 | 143 | 0 | 94 | 279 | 0.15 | 0.51 | 0.00 | 0.34 | T | 19 | 0.51 |
| 772 | 27 | 0 | 52 | 67 | 146 | 0.18 | 0.00 | 0.36 | 0.46 | C | 14 | 0.46 |
| 773 | 26 | 227 | 0 | 0 | 253 | 0.10 | 0.90 | 0.00 | 0.00 | T | 23 | 0.90 |
| 774 | 21 | 0 | 117 | 0 | 138 | 0.15 | 0.00 | 0.85 | 0.00 | G | 26 | 0.85 |
| 775 | 71 | 172 | 0 | 55 | 298 | 0.24 | 0.58 | 0.00 | 0.18 | T | 21 | 0.58 |
| 776 | 83 | 172 | 35 | 54 | 344 | 0.24 | 0.50 | 0.10 | 0.16 | T | 7 | 0.50 |
| 777 | 83 | 208 | 0 | 20 | 311 | 0.27 | 0.67 | 0.00 | 0.06 | T | 6 | 0.67 |
| 778 | 0 | 225 | 49 | 38 | 312 | 0.00 | 0.72 | 0.16 | 0.12 | T | 27 | 0.72 |
| 779 | 51 | 97 | 125 | 69 | 342 | 0.15 | 0.28 | 0.37 | 0.20 | N | 28 | 0.37 |
| 780 | 154 | 24 | 0 | 69 | 247 | 0.62 | 0.10 | 0.00 | 0.28 | A | 21 | 0.62 |
| 781 | 0 | 78 | 0 | 104 | 182 | 0.00 | 0.43 | 0.00 | 0.57 | C | 14 | 0.57 |
| 782 | 0 | 10 | 188 | 70 | 268 | 0.00 | 0.04 | 0.70 | 0.26 | G | 14 | 0.70 |
| 783 | 0 | 0 | 185 | 94 | 279 | 0.00 | 0.00 | 0.66 | 0.34 | G | 9 | 0.66 |
| 784 | 0 | 11 | 0 | 0 | 11 | 0.00 | 1.00 | 0.00 | 0.00 | T | 22 | 1.00 |
| 785 | 134 | 35 | 0 | 68 | 237 | 0.57 | 0.15 | 0.00 | 0.29 | A | 26 | 0.57 |
| 786 | 145 | 0 | 64 | 36 | 245 | 0.59 | 0.00 | 0.26 | 0.15 | A | 20 | 0.59 |
| 787 | 99 | 62 | 46 | 56 | 263 | 0.38 | 0.24 | 0.17 | 0.21 | N | 17 | 0.38 |
| 788 | 0 | 68 | 0 | 0 | 68 | 0.00 | 1.00 | 0.00 | 0.00 | T | 30 | 1.00 |
| 789 | 0 | 68 | 161 | 73 | 302 | 0.00 | 0.23 | 0.53 | 0.24 | G | 30 | 0.53 |
| 790 | 57 | 182 | 0 | 53 | 292 | 0.20 | 0.62 | 0.00 | 0.18 | T | 27 | 0.62 |
| 791 | 92 | 285 | 50 | 4 | 431 | 0.21 | 0.66 | 0.12 | 0.01 | T | 18 | 0.66 |
| 792 | 0 | 0 | 47 | 0 | 47 | 0.00 | 0.00 | 1.00 | 0.00 | G | 16 | 1.00 |
| 793 | 61 | 0 | 138 | 22 | 221 | 0.28 | 0.00 | 0.62 | 0.10 | G | 21 | 0.62 |
| 794 | 0 | 184 | 0 | 0 | 184 | 0.00 | 1.00 | 0.00 | 0.00 | T | 13 | 1.00 |
| 795 | 117 | 152 | 0 | 48 | 317 | 0.37 | 0.48 | 0.00 | 0.15 | T | 9 | 0.48 |
| 796 | 0 | 137 | 0 | 34 | 171 | 0.00 | 0.80 | 0.00 | 0.20 | T | 9 | 0.80 |
| 797 | 0 | 193 | 13 | 50 | 256 | 0.00 | 0.75 | 0.05 | 0.20 | T | 17 | 0.75 |
| 798 | 0 | 60 | 1 | 17 | 78 | 0.00 | 0.77 | 0.01 | 0.22 | T | 20 | 0.77 |
| 799 | 244 | 0 | 1 | 35 | 280 | 0.87 | 0.00 | 0.00 | 0.12 | A | 23 | 0.87 |
| 800 | 0 | 166 | 8 | 0 | 174 | 0.00 | 0.95 | 0.05 | 0.00 | T | 17 | 0.95 |
| 801 | 0 | 154 | 13 | 133 | 300 | 0.00 | 0.51 | 0.04 | 0.44 | T | 14 | 0.51 |
| 802 | 86 | 120 | 45 | 0 | 251 | 0.34 | 0.48 | 0.18 | 0.00 | T | 14 | 0.48 |
| 803 | 55 | 37 | 35 | 194 | 321 | 0.17 | 0.12 | 0.11 | 0.60 | C | 16 | 0.60 |
| 804 | 100 | 0 | 14 | 0 | 114 | 0.88 | 0.00 | 0.12 | 0.00 | A | 10 | 0.88 |
| 805 | 0 | 57 | 0 | 197 | 254 | 0.00 | 0.22 | 0.00 | 0.78 | C | 10 | 0.78 |
| 806 | 13 | 72 | 29 | 0 | 114 | 0.11 | 0.63 | 0.25 | 0.00 | T | 22 | 0.63 |
| 807 | 80 | 0 | 102 | 43 | 225 | 0.36 | 0.00 | 0.45 | 0.19 | G | 12 | 0.45 |
| 808 | 0 | 50 | 121 | 43 | 214 | 0.00 | 0.23 | 0.57 | 0.20 | G | 16 | 0.57 |
| 809 | 0 | 0 | 102 | 151 | 253 | 0.00 | 0.00 | 0.40 | 0.60 | C | 6 | 0.60 |
| 810 | 6 | 19 | 0 | 0 | 25 | 0.24 | 0.76 | 0.00 | 0.00 | T | 7 | 0.76 |
| 811 | 4 | 35 | 22 | 204 | 265 | 0.02 | 0.13 | 0.08 | 0.77 | C | 16 | 0.77 |
| 812 | 6 | 60 | 0 | 197 | 263 | 0.02 | 0.23 | 0.00 | 0.75 | C | 21 | 0.75 |
| 813 | 6 | 0 | 0 | 0 | 6 | 1.00 | 0.00 | 0.00 | 0.00 | A | 23 | 1.00 |
| 814 | 0 | 68 | 265 | 0 | 333 | 0.00 | 0.20 | 0.80 | 0.00 | G | 16 | 0.80 |
| 815 | 81 | 0 | 0 | 48 | 129 | 0.63 | 0.00 | 0.00 | 0.37 | A | 6 | 0.63 |
| 816 | 132 | 151 | 0 | 0 | 283 | 0.47 | 0.53 | 0.00 | 0.00 | T | 6 | 0.53 |
| 817 | 0 | 0 | 115 | 24 | 139 | 0.00 | 0.00 | 0.83 | 0.17 | G | 3 | 0.83 |
| 818 | 102 | 1 | 82 | 85 | 270 | 0.38 | 0.00 | 0.30 | 0.31 | A | 8 | 0.38 |
| 819 | 98 | 0 | 132 | 0 | 230 | 0.43 | 0.00 | 0.57 | 0.00 | G | 3 | 0.57 |
| 820 | 0 | 89 | 0 | 0 | 89 | 0.00 | 1.00 | 0.00 | 0.00 | T | 7 | 1.00 |
| 821 | 0 | 100 | 126 | 56 | 282 | 0.00 | 0.35 | 0.45 | 0.20 | G | 7 | 0.45 |
| 822 | 189 | 43 | 0 | 70 | 302 | 0.63 | 0.14 | 0.00 | 0.23 | A | 16 | 0.63 |
| 823 | 0 | 76 | 24 | 0 | 100 | 0.00 | 0.76 | 0.24 | 0.00 | T | 21 | 0.76 |
| 824 | 0 | 0 | 33 | 58 | 91 | 0.00 | 0.00 | 0.36 | 0.64 | C | 12 | 0.64 |
| 825 | 262 | 121 | 0 | 0 | 383 | 0.68 | 0.32 | 0.00 | 0.00 | A | 13 | 0.68 |
| 826 | 0 | 201 | 0 | 37 | 238 | 0.00 | 0.84 | 0.00 | 0.16 | T | 24 | 0.84 |
| 827 | 82 | 223 | 5 | 85 | 395 | 0.21 | 0.56 | 0.01 | 0.22 | T | 22 | 0.56 |
| 828 | 40 | 0 | 11 | 101 | 152 | 0.26 | 0.00 | 0.07 | 0.66 | C | 17 | 0.66 |
| 829 | 0 | 0 | 13 | 0 | 13 | 0.00 | 0.00 | 1.00 | 0.00 | G | 21 | 1.00 |
| 830 | 118 | 0 | 0 | 0 | 118 | 1.00 | 0.00 | 0.00 | 0.00 | A | 21 | 1.00 |
| 831 | 0 | 99 | 21 | 0 | 120 | 0.00 | 0.82 | 0.17 | 0.00 | T | 13 | 0.82 |
| 832 | 83 | 0 | 0 | 0 | 83 | 1.00 | 0.00 | 0.00 | 0.00 | A | 10 | 1.00 |
| 833 | 0 | 47 | 81 | 163 | 291 | 0.00 | 0.16 | 0.28 | 0.56 | C | 9 | 0.56 |
| 834 | 84 | 194 | 0 | 0 | 278 | 0.30 | 0.70 | 0.00 | 0.00 | T | 19 | 0.70 |
| 835 | 0 | 0 | 0 | 62 | 62 | 0.00 | 0.00 | 0.00 | 1.00 | C | 20 | 1.00 |
| 836 | 35 | 82 | 166 | 62 | 345 | 0.10 | 0.24 | 0.48 | 0.18 | G | 17 | 0.48 |
| 837 | 0 | 0 | 0 | 122 | 122 | 0.00 | 0.00 | 0.00 | 1.00 | C | 9 | 1.00 |
| 838 | 4 | 126 | 0 | 0 | 130 | 0.03 | 0.97 | 0.00 | 0.00 | T | 13 | 0.97 |
| 839 | 4 | 54 | 98 | 85 | 241 | 0.02 | 0.22 | 0.41 | 0.35 | G | 27 | 0.41 |
| 840 | 40 | 54 | 172 | 99 | 365 | 0.11 | 0.15 | 0.47 | 0.27 | G | 15 | 0.47 |
| 841 | 19 | 30 | 166 | 104 | 319 | 0.06 | 0.09 | 0.52 | 0.33 | G | 6 | 0.52 |
| 842 | 0 | 59 | 34 | 42 | 135 | 0.00 | 0.44 | 0.25 | 0.31 | T | 6 | 0.44 |
| 843 | 161 | 0 | 50 | 38 | 249 | 0.65 | 0.00 | 0.20 | 0.15 | A | 26 | 0.65 |
| 844 | 170 | 62 | 0 | 52 | 284 | 0.60 | 0.22 | 0.00 | 0.18 | A | 19 | 0.60 |
| 845 | 0 | 149 | 20 | 52 | 221 | 0.00 | 0.67 | 0.09 | 0.24 | T | 19 | 0.67 |
| 846 | 105 | 140 | 26 | 9 | 280 | 0.38 | 0.50 | 0.09 | 0.03 | T | 19 | 0.50 |
| 847 | 154 | 0 | 5 | 69 | 228 | 0.68 | 0.00 | 0.02 | 0.30 | A | 21 | 0.68 |
| 848 | 129 | 0 | 92 | 61 | 282 | 0.46 | 0.00 | 0.33 | 0.22 | A | 8 | 0.46 |
| 849 | 0 | 21 | 89 | 0 | 110 | 0.00 | 0.19 | 0.81 | 0.00 | G | 6 | 0.81 |
| 850 | 9 | 60 | 97 | 0 | 166 | 0.05 | 0.36 | 0.58 | 0.00 | G | 8 | 0.58 |
| 851 | 0 | 0 | 0 | 194 | 194 | 0.00 | 0.00 | 0.00 | 1.00 | C | 21 | 1.00 |
| 852 | 101 | 36 | 90 | 0 | 227 | 0.44 | 0.16 | 0.40 | 0.00 | A | 12 | 0.44 |
| 853 | 0 | 53 | 53 | 99 | 205 | 0.00 | 0.26 | 0.26 | 0.48 | C | 14 | 0.48 |
| 854 | 2 | 0 | 0 | 112 | 114 | 0.02 | 0.00 | 0.00 | 0.98 | C | 12 | 0.98 |
| 855 | 70 | 132 | 0 | 82 | 284 | 0.25 | 0.46 | 0.00 | 0.29 | T | 18 | 0.46 |
| 856 | 0 | 0 | 187 | 37 | 224 | 0.00 | 0.00 | 0.83 | 0.17 | G | 13 | 0.83 |
| 857 | 97 | 0 | 0 | 78 | 175 | 0.55 | 0.00 | 0.00 | 0.45 | A | 3 | 0.55 |
| 858 | 134 | 60 | 61 | 0 | 255 | 0.53 | 0.24 | 0.24 | 0.00 | A | 13 | 0.53 |
| 859 | 0 | 53 | 0 | 58 | 111 | 0.00 | 0.48 | 0.00 | 0.52 | C | 8 | 0.52 |
| 860 | 59 | 0 | 151 | 0 | 210 | 0.28 | 0.00 | 0.72 | 0.00 | G | 14 | 0.72 |
| 861 | 0 | 0 | 150 | 100 | 250 | 0.00 | 0.00 | 0.60 | 0.40 | G | 10 | 0.60 |
| 862 | 0 | 9 | 0 | 0 | 9 | 0.00 | 1.00 | 0.00 | 0.00 | T | 14 | 1.00 |
| 863 | 94 | 47 | 0 | 62 | 203 | 0.46 | 0.23 | 0.00 | 0.31 | A | 8 | 0.46 |
| 864 | 0 | 85 | 52 | 57 | 194 | 0.00 | 0.44 | 0.27 | 0.29 | T | 7 | 0.44 |
| 865 | 156 | 119 | 49 | 0 | 324 | 0.48 | 0.37 | 0.15 | 0.00 | A | 7 | 0.48 |
| 866 | 0 | 140 | 57 | 0 | 197 | 0.00 | 0.71 | 0.29 | 0.00 | T | 16 | 0.71 |
| 867 | 78 | 0 | 0 | 45 | 123 | 0.63 | 0.00 | 0.00 | 0.37 | A | 14 | 0.63 |
| 868 | 0 | 0 | 14 | 0 | 14 | 0.00 | 0.00 | 1.00 | 0.00 | G | 24 | 1.00 |
| 869 | 153 | 0 | 12 | 51 | 216 | 0.71 | 0.00 | 0.06 | 0.24 | A | 21 | 0.71 |
| 870 | 59 | 138 | 0 | 0 | 197 | 0.30 | 0.70 | 0.00 | 0.00 | T | 24 | 0.70 |
| 871 | 0 | 0 | 0 | 165 | 165 | 0.00 | 0.00 | 0.00 | 1.00 | C | 24 | 1.00 |
| 872 | 2 | 0 | 95 | 0 | 97 | 0.02 | 0.00 | 0.98 | 0.00 | G | 14 | 0.98 |
| 873 | 0 | 209 | 82 | 0 | 291 | 0.00 | 0.72 | 0.28 | 0.00 | T | 27 | 0.72 |
| 874 | 83 | 273 | 56 | 2 | 414 | 0.20 | 0.66 | 0.14 | 0.00 | T | 22 | 0.66 |
| 875 | 67 | 257 | 20 | 32 | 376 | 0.18 | 0.68 | 0.05 | 0.09 | T | 19 | 0.68 |
| 876 | 82 | 0 | 0 | 35 | 117 | 0.70 | 0.00 | 0.00 | 0.30 | A | 22 | 0.70 |
| 877 | 39 | 99 | 167 | 0 | 305 | 0.13 | 0.32 | 0.55 | 0.00 | G | 22 | 0.55 |
| 878 | 56 | 153 | 0 | 24 | 233 | 0.24 | 0.66 | 0.00 | 0.10 | T | 24 | 0.66 |
| 879 | 52 | 37 | 85 | 0 | 174 | 0.30 | 0.21 | 0.49 | 0.00 | G | 21 | 0.49 |
| 880 | 6 | 35 | 75 | 130 | 246 | 0.02 | 0.14 | 0.30 | 0.53 | C | 28 | 0.53 |
| 881 | 59 | 5 | 0 | 104 | 168 | 0.35 | 0.03 | 0.00 | 0.62 | C | 15 | 0.62 |
| 882 | 41 | 22 | 180 | 0 | 243 | 0.17 | 0.09 | 0.74 | 0.00 | G | 33 | 0.74 |
| 883 | 0 | 13 | 155 | 24 | 192 | 0.00 | 0.07 | 0.81 | 0.12 | G | 31 | 0.81 |
| 884 | 24 | 0 | 166 | 0 | 190 | 0.13 | 0.00 | 0.87 | 0.00 | G | 28 | 0.87 |
| 885 | 0 | 0 | 163 | 41 | 204 | 0.00 | 0.00 | 0.80 | 0.20 | G | 22 | 0.80 |
| 886 | 31 | 136 | 0 | 20 | 187 | 0.17 | 0.73 | 0.00 | 0.11 | T | 17 | 0.73 |
| 887 | 36 | 167 | 61 | 24 | 288 | 0.12 | 0.58 | 0.21 | 0.08 | T | 21 | 0.58 |
| 888 | 62 | 231 | 46 | 82 | 421 | 0.15 | 0.55 | 0.11 | 0.19 | T | 25 | 0.55 |
| 889 | 0 | 274 | 0 | 66 | 340 | 0.00 | 0.81 | 0.00 | 0.19 | T | 21 | 0.81 |
| 890 | 65 | 0 | 31 | 54 | 150 | 0.43 | 0.00 | 0.21 | 0.36 | A | 16 | 0.43 |
| 891 | 0 | 201 | 0 | 57 | 258 | 0.00 | 0.78 | 0.00 | 0.22 | T | 11 | 0.78 |
| 892 | 0 | 0 | 3 | 0 | 3 | 0.00 | 0.00 | 1.00 | 0.00 | G | 21 | 1.00 |
| 893 | 217 | 0 | 19 | 45 | 281 | 0.77 | 0.00 | 0.07 | 0.16 | A | 11 | 0.77 |
| 894 | 0 | 181 | 6 | 0 | 187 | 0.00 | 0.97 | 0.03 | 0.00 | T | 26 | 0.97 |
| 895 | 66 | 143 | 0 | 114 | 323 | 0.20 | 0.44 | 0.00 | 0.35 | T | 15 | 0.44 |
| 896 | 0 | 0 | 74 | 125 | 199 | 0.00 | 0.00 | 0.37 | 0.63 | C | 15 | 0.63 |
| 897 | 35 | 0 | 0 | 180 | 215 | 0.16 | 0.00 | 0.00 | 0.84 | C | 27 | 0.84 |
| 898 | 0 | 29 | 0 | 0 | 29 | 0.00 | 1.00 | 0.00 | 0.00 | T | 26 | 1.00 |
| 899 | 82 | 28 | 7 | 0 | 117 | 0.70 | 0.24 | 0.06 | 0.00 | A | 31 | 0.70 |
| 900 | 147 | 0 | 0 | 69 | 216 | 0.68 | 0.00 | 0.00 | 0.32 | A | 26 | 0.68 |
| 901 | 0 | 0 | 43 | 166 | 209 | 0.00 | 0.00 | 0.21 | 0.79 | C | 30 | 0.79 |
| 902 | 35 | 0 | 37 | 0 | 72 | 0.49 | 0.00 | 0.51 | 0.00 | G | 28 | 0.51 |
| 903 | 0 | 0 | 0 | 164 | 164 | 0.00 | 0.00 | 0.00 | 1.00 | C | 22 | 1.00 |
| 904 | 7 | 52 | 156 | 0 | 215 | 0.03 | 0.24 | 0.73 | 0.00 | G | 13 | 0.73 |
| 905 | 0 | 92 | 0 | 42 | 134 | 0.00 | 0.69 | 0.00 | 0.31 | T | 3 | 0.69 |
| 906 | 0 | 0 | 117 | 44 | 161 | 0.00 | 0.00 | 0.73 | 0.27 | G | 3 | 0.73 |
| 907 | 155 | 0 | 83 | 0 | 238 | 0.65 | 0.00 | 0.35 | 0.00 | A | 22 | 0.65 |
| 908 | 79 | 0 | 66 | 40 | 185 | 0.43 | 0.00 | 0.36 | 0.22 | A | 27 | 0.43 |
| 909 | 0 | 248 | 0 | 7 | 255 | 0.00 | 0.97 | 0.00 | 0.03 | T | 27 | 0.97 |
| 910 | 67 | 269 | 14 | 18 | 368 | 0.18 | 0.73 | 0.04 | 0.05 | T | 22 | 0.73 |
| 911 | 0 | 276 | 66 | 0 | 342 | 0.00 | 0.81 | 0.19 | 0.00 | T | 14 | 0.81 |
| 912 | 164 | 0 | 0 | 17 | 181 | 0.91 | 0.00 | 0.00 | 0.09 | A | 24 | 0.91 |
| 913 | 0 | 205 | 20 | 7 | 232 | 0.00 | 0.88 | 0.09 | 0.03 | T | 21 | 0.88 |
| 914 | 32 | 0 | 44 | 0 | 76 | 0.42 | 0.00 | 0.58 | 0.00 | G | 13 | 0.58 |
| 915 | 0 | 0 | 0 | 116 | 116 | 0.00 | 0.00 | 0.00 | 1.00 | C | 8 | 1.00 |
| 916 | 27 | 112 | 50 | 117 | 306 | 0.09 | 0.37 | 0.16 | 0.38 | C | 3 | 0.38 |
| 917 | 72 | 131 | 55 | 51 | 309 | 0.23 | 0.42 | 0.18 | 0.17 | N | 6 | 0.42 |
| 918 | 115 | 0 | 35 | 43 | 193 | 0.60 | 0.00 | 0.18 | 0.22 | A | 19 | 0.60 |
| 919 | 102 | 252 | 20 | 0 | 374 | 0.27 | 0.67 | 0.05 | 0.00 | T | 11 | 0.67 |
| 920 | 52 | 318 | 0 | 1 | 371 | 0.14 | 0.86 | 0.00 | 0.00 | T | 10 | 0.86 |
| 921 | 53 | 0 | 106 | 31 | 190 | 0.28 | 0.00 | 0.56 | 0.16 | G | 16 | 0.56 |
| 922 | 0 | 0 | 109 | 60 | 169 | 0.00 | 0.00 | 0.64 | 0.36 | G | 6 | 0.64 |
| 923 | 159 | 0 | 0 | 0 | 159 | 1.00 | 0.00 | 0.00 | 0.00 | A | 21 | 1.00 |
| 924 | 0 | 0 | 31 | 57 | 88 | 0.00 | 0.00 | 0.35 | 0.65 | C | 10 | 0.65 |
| 925 | 29 | 0 | 0 | 0 | 29 | 1.00 | 0.00 | 0.00 | 0.00 | A | 31 | 1.00 |
| 926 | 0 | 247 | 15 | 42 | 304 | 0.00 | 0.81 | 0.05 | 0.14 | T | 28 | 0.81 |
| 927 | 0 | 0 | 23 | 0 | 23 | 0.00 | 0.00 | 1.00 | 0.00 | G | 26 | 1.00 |
| 928 | 139 | 113 | 47 | 4 | 303 | 0.46 | 0.37 | 0.16 | 0.01 | A | 27 | 0.46 |
| 929 | 0 | 70 | 87 | 26 | 183 | 0.00 | 0.38 | 0.48 | 0.14 | G | 21 | 0.48 |
| 930 | 106 | 90 | 66 | 30 | 292 | 0.36 | 0.31 | 0.23 | 0.10 | N | 14 | 0.36 |
| 931 | 133 | 0 | 0 | 0 | 133 | 1.00 | 0.00 | 0.00 | 0.00 | A | 16 | 1.00 |
| 932 | 163 | 0 | 6 | 67 | 236 | 0.69 | 0.00 | 0.03 | 0.28 | A | 16 | 0.69 |
| 933 | 97 | 0 | 1 | 64 | 162 | 0.60 | 0.00 | 0.01 | 0.40 | A | 30 | 0.60 |
| 934 | 0 | 223 | 0 | 0 | 223 | 0.00 | 1.00 | 0.00 | 0.00 | T | 27 | 1.00 |
| 935 | 0 | 0 | 132 | 89 | 221 | 0.00 | 0.00 | 0.60 | 0.40 | G | 25 | 0.60 |
| 936 | 48 | 63 | 0 | 102 | 213 | 0.23 | 0.30 | 0.00 | 0.48 | C | 26 | 0.48 |
| 937 | 100 | 0 | 30 | 45 | 175 | 0.57 | 0.00 | 0.17 | 0.26 | A | 31 | 0.57 |
| 938 | 84 | 136 | 0 | 40 | 260 | 0.32 | 0.52 | 0.00 | 0.15 | T | 26 | 0.52 |
| 939 | 93 | 77 | 62 | 47 | 279 | 0.33 | 0.28 | 0.22 | 0.17 | N | 11 | 0.33 |
| 940 | 102 | 0 | 0 | 22 | 124 | 0.82 | 0.00 | 0.00 | 0.18 | A | 9 | 0.82 |
| 941 | 0 | 4 | 128 | 22 | 154 | 0.00 | 0.03 | 0.83 | 0.14 | G | 22 | 0.83 |
| 942 | 10 | 0 | 129 | 68 | 207 | 0.05 | 0.00 | 0.62 | 0.33 | G | 21 | 0.62 |
| 943 | 62 | 25 | 0 | 119 | 206 | 0.30 | 0.12 | 0.00 | 0.58 | C | 16 | 0.58 |
| 944 | 0 | 0 | 15 | 86 | 101 | 0.00 | 0.00 | 0.15 | 0.85 | C | 31 | 0.85 |
| 945 | 26 | 194 | 39 | 0 | 259 | 0.10 | 0.75 | 0.15 | 0.00 | T | 27 | 0.75 |
| 946 | 48 | 195 | 39 | 0 | 282 | 0.17 | 0.69 | 0.14 | 0.00 | T | 26 | 0.69 |
| 947 | 25 | 0 | 0 | 0 | 25 | 1.00 | 0.00 | 0.00 | 0.00 | A | 21 | 1.00 |
| 948 | 23 | 0 | 88 | 146 | 257 | 0.09 | 0.00 | 0.34 | 0.57 | C | 15 | 0.57 |
| 949 | 0 | 6 | 0 | 0 | 6 | 0.00 | 1.00 | 0.00 | 0.00 | T | 10 | 1.00 |
| 950 | 116 | 6 | 8 | 0 | 130 | 0.89 | 0.05 | 0.06 | 0.00 | A | 8 | 0.89 |
| 951 | 42 | 58 | 0 | 118 | 218 | 0.19 | 0.27 | 0.00 | 0.54 | C | 8 | 0.54 |
| 952 | 40 | 54 | 150 | 90 | 334 | 0.12 | 0.16 | 0.45 | 0.27 | N | 15 | 0.45 |
| 953 | 47 | 54 | 0 | 74 | 175 | 0.27 | 0.31 | 0.00 | 0.42 | C | 8 | 0.42 |
| 954 | 0 | 98 | 0 | 6 | 104 | 0.00 | 0.94 | 0.00 | 0.06 | T | 7 | 0.94 |
| 955 | 45 | 97 | 125 | 0 | 267 | 0.17 | 0.36 | 0.47 | 0.00 | G | 26 | 0.47 |
| 956 | 0 | 69 | 157 | 42 | 268 | 0.00 | 0.26 | 0.59 | 0.16 | G | 21 | 0.59 |
| 957 | 26 | 62 | 166 | 17 | 271 | 0.10 | 0.23 | 0.61 | 0.06 | G | 15 | 0.61 |
| 958 | 59 | 0 | 188 | 0 | 247 | 0.24 | 0.00 | 0.76 | 0.00 | G | 7 | 0.76 |
| 959 | 22 | 118 | 44 | 34 | 218 | 0.10 | 0.54 | 0.20 | 0.16 | T | 28 | 0.54 |
| 960 | 21 | 0 | 0 | 75 | 96 | 0.22 | 0.00 | 0.00 | 0.78 | C | 22 | 0.78 |
| 961 | 27 | 21 | 69 | 139 | 256 | 0.11 | 0.08 | 0.27 | 0.54 | C | 21 | 0.54 |
| 962 | 47 | 29 | 0 | 117 | 193 | 0.24 | 0.15 | 0.00 | 0.61 | C | 16 | 0.61 |
| 963 | 48 | 121 | 60 | 0 | 229 | 0.21 | 0.53 | 0.26 | 0.00 | T | 15 | 0.53 |
| 964 | 70 | 184 | 81 | 37 | 372 | 0.19 | 0.49 | 0.22 | 0.10 | T | 15 | 0.49 |
| 965 | 46 | 193 | 70 | 0 | 309 | 0.15 | 0.62 | 0.23 | 0.00 | T | 12 | 0.62 |
| 966 | 0 | 187 | 46 | 49 | 282 | 0.00 | 0.66 | 0.16 | 0.17 | T | 11 | 0.66 |
| 967 | 17 | 125 | 0 | 116 | 258 | 0.07 | 0.48 | 0.00 | 0.45 | T | 8 | 0.48 |
| 968 | 0 | 27 | 19 | 115 | 161 | 0.00 | 0.17 | 0.12 | 0.71 | C | 8 | 0.71 |
| 969 | 99 | 0 | 0 | 95 | 194 | 0.51 | 0.00 | 0.00 | 0.49 | A | 7 | 0.51 |
| 970 | 0 | 80 | 29 | 38 | 147 | 0.00 | 0.54 | 0.20 | 0.26 | T | 7 | 0.54 |
| 971 | 0 | 51 | 16 | 32 | 99 | 0.00 | 0.52 | 0.16 | 0.32 | T | 14 | 0.52 |
| 972 | 209 | 13 | 25 | 56 | 303 | 0.69 | 0.04 | 0.08 | 0.18 | A | 13 | 0.69 |
| 973 | 0 | 115 | 24 | 0 | 139 | 0.00 | 0.83 | 0.17 | 0.00 | T | 6 | 0.83 |
| 974 | 125 | 0 | 0 | 10 | 135 | 0.93 | 0.00 | 0.00 | 0.07 | A | 3 | 0.93 |
| 975 | 89 | 0 | 6 | 0 | 95 | 0.94 | 0.00 | 0.06 | 0.00 | A | 21 | 0.94 |
| 976 | 61 | 34 | 39 | 63 | 197 | 0.31 | 0.17 | 0.20 | 0.32 | N | 15 | 0.32 |
| 977 | 7 | 0 | 53 | 0 | 60 | 0.12 | 0.00 | 0.88 | 0.00 | G | 14 | 0.88 |
| 978 | 2 | 32 | 74 | 91 | 199 | 0.01 | 0.16 | 0.37 | 0.46 | C | 14 | 0.46 |
| 979 | 0 | 71 | 47 | 87 | 205 | 0.00 | 0.35 | 0.23 | 0.42 | C | 14 | 0.42 |
| 980 | 22 | 14 | 0 | 75 | 111 | 0.20 | 0.13 | 0.00 | 0.68 | C | 22 | 0.68 |
| 981 | 54 | 24 | 173 | 26 | 277 | 0.19 | 0.09 | 0.62 | 0.09 | G | 16 | 0.62 |
| 982 | 0 | 11 | 173 | 0 | 184 | 0.00 | 0.06 | 0.94 | 0.00 | G | 16 | 0.94 |
| 983 | 142 | 76 | 0 | 12 | 230 | 0.62 | 0.33 | 0.00 | 0.05 | A | 15 | 0.62 |
| 984 | 95 | 0 | 76 | 0 | 171 | 0.56 | 0.00 | 0.44 | 0.00 | A | 15 | 0.56 |
| 985 | 0 | 117 | 0 | 55 | 172 | 0.00 | 0.68 | 0.00 | 0.32 | T | 16 | 0.68 |
| 986 | 15 | 21 | 163 | 80 | 279 | 0.05 | 0.08 | 0.58 | 0.29 | G | 23 | 0.58 |
| 987 | 9 | 7 | 0 | 0 | 16 | 0.56 | 0.44 | 0.00 | 0.00 | A | 20 | 0.56 |
| 988 | 0 | 7 | 85 | 61 | 153 | 0.00 | 0.05 | 0.56 | 0.40 | G | 17 | 0.56 |
| 989 | 0 | 9 | 0 | 55 | 64 | 0.00 | 0.14 | 0.00 | 0.86 | C | 14 | 0.86 |
| 990 | 151 | 59 | 70 | 67 | 347 | 0.44 | 0.17 | 0.20 | 0.19 | N | 14 | 0.44 |
| 991 | 0 | 140 | 59 | 46 | 245 | 0.00 | 0.57 | 0.24 | 0.19 | T | 13 | 0.57 |
| 992 | 150 | 0 | 91 | 0 | 241 | 0.62 | 0.00 | 0.38 | 0.00 | A | 16 | 0.62 |
| 993 | 150 | 0 | 0 | 0 | 150 | 1.00 | 0.00 | 0.00 | 0.00 | A | 10 | 1.00 |
| 994 | 0 | 65 | 73 | 49 | 187 | 0.00 | 0.35 | 0.39 | 0.26 | G | 11 | 0.39 |
| 995 | 0 | 108 | 60 | 58 | 226 | 0.00 | 0.48 | 0.27 | 0.26 | T | 10 | 0.48 |
| 996 | 66 | 80 | 49 | 51 | 246 | 0.27 | 0.33 | 0.20 | 0.21 | N | 12 | 0.33 |
| 997 | 14 | 43 | 113 | 23 | 193 | 0.07 | 0.22 | 0.59 | 0.12 | G | 16 | 0.59 |
| 998 | 0 | 0 | 115 | 32 | 147 | 0.00 | 0.00 | 0.78 | 0.22 | G | 15 | 0.78 |
| 999 | 69 | 0 | 112 | 29 | 210 | 0.33 | 0.00 | 0.53 | 0.14 | G | 13 | 0.53 |
| 1000 | 0 | 128 | 0 | 30 | 158 | 0.00 | 0.81 | 0.00 | 0.19 | T | 6 | 0.81 |
| 1001 | 0 | 0 | 0 | 43 | 43 | 0.00 | 0.00 | 0.00 | 1.00 | C | 27 | 1.00 |
| 1002 | 0 | 56 | 0 | 41 | 97 | 0.00 | 0.58 | 0.00 | 0.42 | T | 17 | 0.58 |
| 1003 | 188 | 0 | 24 | 0 | 212 | 0.89 | 0.00 | 0.11 | 0.00 | A | 21 | 0.89 |
| 1004 | 194 | 0 | 46 | 32 | 272 | 0.71 | 0.00 | 0.17 | 0.12 | A | 15 | 0.71 |
| 1005 | 0 | 0 | 41 | 33 | 74 | 0.00 | 0.00 | 0.55 | 0.45 | G | 14 | 0.55 |
| 1006 | 145 | 0 | 29 | 0 | 174 | 0.83 | 0.00 | 0.17 | 0.00 | A | 7 | 0.83 |
| 1007 | 116 | 0 | 30 | 21 | 167 | 0.69 | 0.00 | 0.18 | 0.13 | A | 22 | 0.69 |
| 1008 | 98 | 202 | 0 | 0 | 300 | 0.33 | 0.67 | 0.00 | 0.00 | T | 15 | 0.67 |
| 1009 | 84 | 218 | 20 | 0 | 322 | 0.26 | 0.68 | 0.06 | 0.00 | T | 15 | 0.68 |
| 1010 | 74 | 0 | 20 | 0 | 94 | 0.79 | 0.00 | 0.21 | 0.00 | A | 15 | 0.79 |
| 1011 | 0 | 132 | 0 | 87 | 219 | 0.00 | 0.60 | 0.00 | 0.40 | T | 18 | 0.60 |
| 1012 | 67 | 0 | 32 | 63 | 162 | 0.41 | 0.00 | 0.20 | 0.39 | A | 21 | 0.41 |
| 1013 | 17 | 196 | 37 | 0 | 250 | 0.07 | 0.78 | 0.15 | 0.00 | T | 17 | 0.78 |
| 1014 | 40 | 226 | 22 | 46 | 334 | 0.12 | 0.68 | 0.07 | 0.14 | T | 19 | 0.68 |
| 1015 | 0 | 221 | 0 | 52 | 273 | 0.00 | 0.81 | 0.00 | 0.19 | T | 14 | 0.81 |
| 1016 | 32 | 0 | 0 | 84 | 116 | 0.28 | 0.00 | 0.00 | 0.72 | C | 14 | 0.72 |
| 1017 | 6 | 0 | 61 | 112 | 179 | 0.03 | 0.00 | 0.34 | 0.63 | C | 8 | 0.63 |
| 1018 | 0 | 146 | 105 | 0 | 251 | 0.00 | 0.58 | 0.42 | 0.00 | T | 12 | 0.58 |
| 1019 | 0 | 127 | 113 | 0 | 240 | 0.00 | 0.53 | 0.47 | 0.00 | T | 6 | 0.53 |
| 1020 | 0 | 141 | 123 | 47 | 311 | 0.00 | 0.45 | 0.40 | 0.15 | T | 3 | 0.45 |
| 1021 | 55 | 0 | 0 | 0 | 55 | 1.00 | 0.00 | 0.00 | 0.00 | A | 8 | 1.00 |
| 1022 | 0 | 108 | 0 | 132 | 240 | 0.00 | 0.45 | 0.00 | 0.55 | C | 8 | 0.55 |
| 1023 | 51 | 108 | 40 | 0 | 199 | 0.26 | 0.54 | 0.20 | 0.00 | T | 7 | 0.54 |
| 1024 | 0 | 78 | 0 | 133 | 211 | 0.00 | 0.37 | 0.00 | 0.63 | C | 8 | 0.63 |
| 1025 | 73 | 57 | 0 | 120 | 250 | 0.29 | 0.23 | 0.00 | 0.48 | C | 7 | 0.48 |
| 1026 | 69 | 52 | 38 | 56 | 215 | 0.32 | 0.24 | 0.18 | 0.26 | N | 8 | 0.32 |
| 1027 | 84 | 43 | 89 | 56 | 272 | 0.31 | 0.16 | 0.33 | 0.21 | N | 8 | 0.33 |
| 1028 | 83 | 85 | 96 | 33 | 297 | 0.28 | 0.29 | 0.32 | 0.11 | N | 8 | 0.32 |
| 1029 | 0 | 80 | 0 | 0 | 80 | 0.00 | 1.00 | 0.00 | 0.00 | T | 7 | 1.00 |
| 1030 | 60 | 76 | 105 | 14 | 255 | 0.24 | 0.30 | 0.41 | 0.05 | G | 6 | 0.41 |
| 1031 | 90 | 120 | 64 | 6 | 280 | 0.32 | 0.43 | 0.23 | 0.02 | T | 12 | 0.43 |
| 1032 | 53 | 94 | 0 | 0 | 147 | 0.36 | 0.64 | 0.00 | 0.00 | T | 10 | 0.64 |
| 1033 | 100 | 7 | 83 | 0 | 190 | 0.53 | 0.04 | 0.44 | 0.00 | A | 8 | 0.53 |
| 1034 | 82 | 0 | 72 | 82 | 236 | 0.35 | 0.00 | 0.31 | 0.35 | A | 8 | 0.35 |
| 1035 | 99 | 0 | 61 | 51 | 211 | 0.47 | 0.00 | 0.29 | 0.24 | A | 10 | 0.47 |
| 1036 | 77 | 0 | 46 | 91 | 214 | 0.36 | 0.00 | 0.21 | 0.43 | C | 8 | 0.43 |
| 1037 | 93 | 0 | 63 | 0 | 156 | 0.60 | 0.00 | 0.40 | 0.00 | A | 6 | 0.60 |
| 1038 | 106 | 0 | 26 | 130 | 262 | 0.40 | 0.00 | 0.10 | 0.50 | C | 8 | 0.50 |
| 1039 | 0 | 21 | 0 | 156 | 177 | 0.00 | 0.12 | 0.00 | 0.88 | C | 8 | 0.88 |
| 1040 | 0 | 99 | 63 | 0 | 162 | 0.00 | 0.61 | 0.39 | 0.00 | T | 15 | 0.61 |
| 1041 | 102 | 117 | 63 | 78 | 360 | 0.28 | 0.32 | 0.17 | 0.22 | N | 7 | 0.32 |
| 1042 | 101 | 0 | 0 | 0 | 101 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 1043 | 0 | 79 | 0 | 155 | 234 | 0.00 | 0.34 | 0.00 | 0.66 | C | 8 | 0.66 |
| 1044 | 0 | 0 | 103 | 138 | 241 | 0.00 | 0.00 | 0.43 | 0.57 | C | 5 | 0.57 |
| 1045 | 0 | 128 | 91 | 96 | 315 | 0.00 | 0.41 | 0.29 | 0.30 | T | 15 | 0.41 |
| 1046 | 6 | 161 | 101 | 63 | 331 | 0.02 | 0.49 | 0.31 | 0.19 | T | 15 | 0.49 |
| 1047 | 0 | 131 | 50 | 62 | 243 | 0.00 | 0.54 | 0.21 | 0.26 | T | 12 | 0.54 |
| 1048 | 0 | 114 | 0 | 83 | 197 | 0.00 | 0.58 | 0.00 | 0.42 | T | 12 | 0.58 |
| 1049 | 99 | 178 | 46 | 0 | 323 | 0.31 | 0.55 | 0.14 | 0.00 | T | 14 | 0.55 |
| 1050 | 0 | 197 | 0 | 15 | 212 | 0.00 | 0.93 | 0.00 | 0.07 | T | 11 | 0.93 |
| 1051 | 104 | 196 | 21 | 0 | 321 | 0.32 | 0.61 | 0.07 | 0.00 | T | 10 | 0.61 |
| 1052 | 0 | 0 | 2 | 125 | 127 | 0.00 | 0.00 | 0.02 | 0.98 | C | 15 | 0.98 |
| 1053 | 110 | 62 | 9 | 148 | 329 | 0.33 | 0.19 | 0.03 | 0.45 | C | 12 | 0.45 |
| 1054 | 0 | 99 | 2 | 0 | 101 | 0.00 | 0.98 | 0.02 | 0.00 | T | 12 | 0.98 |
| 1055 | 41 | 143 | 3 | 112 | 299 | 0.14 | 0.48 | 0.01 | 0.37 | T | 16 | 0.48 |
| 1056 | 50 | 0 | 0 | 92 | 142 | 0.35 | 0.00 | 0.00 | 0.65 | C | 18 | 0.65 |
| 1057 | 53 | 244 | 0 | 37 | 334 | 0.16 | 0.73 | 0.00 | 0.11 | T | 16 | 0.73 |
| 1058 | 20 | 204 | 31 | 29 | 284 | 0.07 | 0.72 | 0.11 | 0.10 | T | 12 | 0.72 |
| 1059 | 101 | 209 | 45 | 0 | 355 | 0.28 | 0.59 | 0.13 | 0.00 | T | 7 | 0.59 |
| 1060 | 128 | 107 | 0 | 15 | 250 | 0.51 | 0.43 | 0.00 | 0.06 | A | 8 | 0.51 |
| 1061 | 96 | 0 | 46 | 0 | 142 | 0.68 | 0.00 | 0.32 | 0.00 | A | 9 | 0.68 |
| 1062 | 129 | 91 | 29 | 49 | 298 | 0.43 | 0.31 | 0.10 | 0.16 | A | 13 | 0.43 |
| 1063 | 88 | 76 | 46 | 48 | 258 | 0.34 | 0.29 | 0.18 | 0.19 | N | 8 | 0.34 |
| 1064 | 92 | 0 | 0 | 35 | 127 | 0.72 | 0.00 | 0.00 | 0.28 | A | 6 | 0.72 |
| 1065 | 0 | 133 | 2 | 25 | 160 | 0.00 | 0.83 | 0.01 | 0.16 | T | 8 | 0.83 |
| 1066 | 109 | 0 | 0 | 43 | 152 | 0.72 | 0.00 | 0.00 | 0.28 | A | 12 | 0.72 |
| 1067 | 0 | 177 | 17 | 0 | 194 | 0.00 | 0.91 | 0.09 | 0.00 | T | 16 | 0.91 |
| 1068 | 0 | 114 | 40 | 0 | 154 | 0.00 | 0.74 | 0.26 | 0.00 | T | 14 | 0.74 |
| 1069 | 67 | 0 | 0 | 75 | 142 | 0.47 | 0.00 | 0.00 | 0.53 | C | 7 | 0.53 |
| 1070 | 74 | 132 | 24 | 39 | 269 | 0.28 | 0.49 | 0.09 | 0.14 | T | 7 | 0.49 |
| 1071 | 0 | 154 | 0 | 39 | 193 | 0.00 | 0.80 | 0.00 | 0.20 | T | 10 | 0.80 |
| 1072 | 51 | 88 | 69 | 2 | 210 | 0.24 | 0.42 | 0.33 | 0.01 | T | 9 | 0.42 |
| 1073 | 89 | 82 | 80 | 0 | 251 | 0.35 | 0.33 | 0.32 | 0.00 | A | 9 | 0.35 |
Trimming thresholds :
| Raw sequence information | Values |
|---|---|
| Raw sequence length : | 1073 bp |
| Mean of raw sequence Phred quality scores : | 20.76 |
| Quality report - Trimmed sequence information | Values |
|---|---|
| Trimmed sequence length : | 169 bp |
| Trimmed sequence start position : | 30 |
| Trimmed sequence end position : | 199 |
| Mean of trimmed sequence Phred quality scores : | 24.15 |
Trimming thresholds :
| Raw sequence information | Values |
|---|---|
| Raw sequence length : | 1073 bp |
| Mean of raw sequence primary peak ratios : | 0.73 |
| Percentage of non-mixed positions on raw sequence : | 47.44 % |
| Mixed peak report - Trimmed sequence information | Values |
|---|---|
| Trimmed sequence length : | 975 bp |
| Trimmed sequence start position : | 1 |
| Trimmed sequence end position : | 975 |
| Mean of trimmed sequence primary peak ratios : | 0.74 |
| Percentage of non-mixed positions on trimmed sequence : | 49.95 % |
Warning: Trimmed sequence from the sequencing result #1 was found with insufficient length or insufficient quality and will not be used.
| Final trimmed sequence information | Values |
|---|---|
| Length : | 170 bp |
| Start position : | 30 |
| End position : | 199 |
| Mean of Phred quality scores : | 24.22 |
| Mean of primary peak ratio : | 0.82 |
| Percentage of non-mixed positions : | 69.41 % |
Sequence of primary peaks:
Length: 225 bp
## CAATTAATTCCATACCCTCTAACCTAACTTACTAAACCCTTTAGTGAGGGTTAATTACCACCCCCCATACCACTAATTAACTAAAAATTCACCTACCAACCACAACCAATCAACAACACAAACCCCTCCCCAAAACAAAACTAACAACCCACCCACCCAACCTCACATAAACACAATAACCCTCTAACCTAAAATTACTAAACCCTTTAGTGAGGGTTAATTAAT
Open chromatogram file in a new tab
| Position | A peak | T peak | G peak | C peak | Total | A ratio | T ratio | G ratio | C ratio | Primary base | Quality score | Primary ratio |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 0 | 0 | 0 | 1716 | 1716 | 0.00 | 0.00 | 0.00 | 1.00 | C | 14 | 1.00 |
| 2 | 1911 | 1317 | 0 | 0 | 3228 | 0.59 | 0.41 | 0.00 | 0.00 | A | 5 | 0.59 |
| 3 | 1244 | 0 | 0 | 872 | 2116 | 0.59 | 0.00 | 0.00 | 0.41 | A | 7 | 0.59 |
| 4 | 0 | 2071 | 0 | 0 | 2071 | 0.00 | 1.00 | 0.00 | 0.00 | T | 3 | 1.00 |
| 5 | 1362 | 2091 | 0 | 3 | 3456 | 0.39 | 0.61 | 0.00 | 0.00 | T | 6 | 0.61 |
| 6 | 1994 | 0 | 0 | 557 | 2551 | 0.78 | 0.00 | 0.00 | 0.22 | A | 6 | 0.78 |
| 7 | 1645 | 0 | 0 | 0 | 1645 | 1.00 | 0.00 | 0.00 | 0.00 | A | 40 | 1.00 |
| 8 | 0 | 1830 | 0 | 0 | 1830 | 0.00 | 1.00 | 0.00 | 0.00 | T | 47 | 1.00 |
| 9 | 0 | 2646 | 0 | 0 | 2646 | 0.00 | 1.00 | 0.00 | 0.00 | T | 37 | 1.00 |
| 10 | 2 | 0 | 0 | 1543 | 1545 | 0.00 | 0.00 | 0.00 | 1.00 | C | 37 | 1.00 |
| 11 | 0 | 0 | 0 | 1309 | 1309 | 0.00 | 0.00 | 0.00 | 1.00 | C | 42 | 1.00 |
| 12 | 1139 | 0 | 0 | 0 | 1139 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 13 | 0 | 943 | 0 | 137 | 1080 | 0.00 | 0.87 | 0.00 | 0.13 | T | 24 | 0.87 |
| 14 | 1234 | 0 | 0 | 0 | 1234 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 15 | 0 | 0 | 0 | 1252 | 1252 | 0.00 | 0.00 | 0.00 | 1.00 | C | 20 | 1.00 |
| 16 | 0 | 0 | 0 | 1457 | 1457 | 0.00 | 0.00 | 0.00 | 1.00 | C | 48 | 1.00 |
| 17 | 0 | 2 | 0 | 1231 | 1233 | 0.00 | 0.00 | 0.00 | 1.00 | C | 48 | 1.00 |
| 18 | 0 | 1898 | 0 | 0 | 1898 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 19 | 0 | 0 | 0 | 1203 | 1203 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 20 | 0 | 1083 | 0 | 0 | 1083 | 0.00 | 1.00 | 0.00 | 0.00 | T | 55 | 1.00 |
| 21 | 1292 | 0 | 0 | 0 | 1292 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 22 | 1076 | 0 | 0 | 0 | 1076 | 1.00 | 0.00 | 0.00 | 0.00 | A | 26 | 1.00 |
| 23 | 0 | 0 | 0 | 787 | 787 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 24 | 0 | 1 | 0 | 1050 | 1051 | 0.00 | 0.00 | 0.00 | 1.00 | C | 57 | 1.00 |
| 25 | 0 | 1118 | 0 | 1 | 1119 | 0.00 | 1.00 | 0.00 | 0.00 | T | 50 | 1.00 |
| 26 | 1301 | 0 | 0 | 0 | 1301 | 1.00 | 0.00 | 0.00 | 0.00 | A | 23 | 1.00 |
| 27 | 695 | 0 | 0 | 0 | 695 | 1.00 | 0.00 | 0.00 | 0.00 | A | 23 | 1.00 |
| 28 | 0 | 0 | 0 | 179 | 179 | 0.00 | 0.00 | 0.00 | 1.00 | C | 13 | 1.00 |
| 29 | 0 | 1656 | 0 | 1 | 1657 | 0.00 | 1.00 | 0.00 | 0.00 | T | 25 | 1.00 |
| 30 | 0 | 2480 | 0 | 0 | 2480 | 0.00 | 1.00 | 0.00 | 0.00 | T | 50 | 1.00 |
| 31 | 1317 | 2 | 0 | 1 | 1320 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 32 | 0 | 0 | 0 | 1038 | 1038 | 0.00 | 0.00 | 0.00 | 1.00 | C | 50 | 1.00 |
| 33 | 2 | 1195 | 0 | 72 | 1269 | 0.00 | 0.94 | 0.00 | 0.06 | T | 41 | 0.94 |
| 34 | 1002 | 609 | 0 | 0 | 1611 | 0.62 | 0.38 | 0.00 | 0.00 | A | 14 | 0.62 |
| 35 | 967 | 0 | 0 | 0 | 967 | 1.00 | 0.00 | 0.00 | 0.00 | A | 26 | 1.00 |
| 36 | 509 | 0 | 0 | 0 | 509 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 37 | 0 | 0 | 0 | 1061 | 1061 | 0.00 | 0.00 | 0.00 | 1.00 | C | 26 | 1.00 |
| 38 | 71 | 0 | 0 | 777 | 848 | 0.08 | 0.00 | 0.00 | 0.92 | C | 48 | 0.92 |
| 39 | 0 | 1 | 0 | 1521 | 1522 | 0.00 | 0.00 | 0.00 | 1.00 | C | 47 | 1.00 |
| 40 | 0 | 1695 | 0 | 121 | 1816 | 0.00 | 0.93 | 0.00 | 0.07 | T | 44 | 0.93 |
| 41 | 11 | 2209 | 0 | 0 | 2220 | 0.00 | 1.00 | 0.00 | 0.00 | T | 46 | 1.00 |
| 42 | 85 | 1566 | 0 | 0 | 1651 | 0.05 | 0.95 | 0.00 | 0.00 | T | 28 | 0.95 |
| 43 | 1103 | 0 | 0 | 0 | 1103 | 1.00 | 0.00 | 0.00 | 0.00 | A | 31 | 1.00 |
| 44 | 0 | 222 | 1015 | 0 | 1237 | 0.00 | 0.18 | 0.82 | 0.00 | G | 31 | 0.82 |
| 45 | 83 | 1011 | 0 | 0 | 1094 | 0.08 | 0.92 | 0.00 | 0.00 | T | 47 | 0.92 |
| 46 | 0 | 3 | 1003 | 0 | 1006 | 0.00 | 0.00 | 1.00 | 0.00 | G | 36 | 1.00 |
| 47 | 797 | 0 | 0 | 246 | 1043 | 0.76 | 0.00 | 0.00 | 0.24 | A | 25 | 0.76 |
| 48 | 1 | 0 | 1099 | 352 | 1452 | 0.00 | 0.00 | 0.76 | 0.24 | G | 28 | 0.76 |
| 49 | 0 | 0 | 1765 | 303 | 2068 | 0.00 | 0.00 | 0.85 | 0.15 | G | 36 | 0.85 |
| 50 | 0 | 5 | 1133 | 442 | 1580 | 0.00 | 0.00 | 0.72 | 0.28 | G | 28 | 0.72 |
| 51 | 0 | 1256 | 1 | 0 | 1257 | 0.00 | 1.00 | 0.00 | 0.00 | T | 46 | 1.00 |
| 52 | 0 | 1234 | 0 | 0 | 1234 | 0.00 | 1.00 | 0.00 | 0.00 | T | 36 | 1.00 |
| 53 | 1284 | 4 | 0 | 0 | 1288 | 1.00 | 0.00 | 0.00 | 0.00 | A | 28 | 1.00 |
| 54 | 1156 | 0 | 0 | 0 | 1156 | 1.00 | 0.00 | 0.00 | 0.00 | A | 19 | 1.00 |
| 55 | 191 | 1760 | 0 | 0 | 1951 | 0.10 | 0.90 | 0.00 | 0.00 | T | 17 | 0.90 |
| 56 | 191 | 4604 | 0 | 404 | 5199 | 0.04 | 0.89 | 0.00 | 0.08 | T | 30 | 0.89 |
| 57 | 4997 | 11 | 0 | 0 | 5008 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 58 | 0 | 0 | 0 | 474 | 474 | 0.00 | 0.00 | 0.00 | 1.00 | C | 21 | 1.00 |
| 59 | 309 | 0 | 0 | 521 | 830 | 0.37 | 0.00 | 0.00 | 0.63 | C | 10 | 0.63 |
| 60 | 99 | 0 | 2 | 0 | 101 | 0.98 | 0.00 | 0.02 | 0.00 | A | 11 | 0.98 |
| 61 | 0 | 0 | 0 | 514 | 514 | 0.00 | 0.00 | 0.00 | 1.00 | C | 41 | 1.00 |
| 62 | 0 | 0 | 0 | 707 | 707 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 63 | 0 | 0 | 0 | 736 | 736 | 0.00 | 0.00 | 0.00 | 1.00 | C | 52 | 1.00 |
| 64 | 0 | 0 | 0 | 754 | 754 | 0.00 | 0.00 | 0.00 | 1.00 | C | 54 | 1.00 |
| 65 | 0 | 0 | 0 | 694 | 694 | 0.00 | 0.00 | 0.00 | 1.00 | C | 54 | 1.00 |
| 66 | 1 | 0 | 0 | 624 | 625 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 67 | 232 | 0 | 4 | 0 | 236 | 0.98 | 0.00 | 0.02 | 0.00 | A | 58 | 0.98 |
| 68 | 0 | 606 | 0 | 0 | 606 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 69 | 437 | 0 | 0 | 0 | 437 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 70 | 0 | 0 | 0 | 584 | 584 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 71 | 0 | 0 | 0 | 656 | 656 | 0.00 | 0.00 | 0.00 | 1.00 | C | 41 | 1.00 |
| 72 | 232 | 0 | 0 | 134 | 366 | 0.63 | 0.00 | 0.00 | 0.37 | A | 36 | 0.63 |
| 73 | 1 | 0 | 8 | 312 | 321 | 0.00 | 0.00 | 0.02 | 0.97 | C | 41 | 0.97 |
| 74 | 1 | 693 | 0 | 0 | 694 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 75 | 449 | 88 | 0 | 0 | 537 | 0.84 | 0.16 | 0.00 | 0.00 | A | 34 | 0.84 |
| 76 | 399 | 34 | 0 | 0 | 433 | 0.92 | 0.08 | 0.00 | 0.00 | A | 34 | 0.92 |
| 77 | 0 | 645 | 0 | 0 | 645 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 78 | 1 | 1014 | 0 | 0 | 1015 | 0.00 | 1.00 | 0.00 | 0.00 | T | 51 | 1.00 |
| 79 | 458 | 215 | 0 | 0 | 673 | 0.68 | 0.32 | 0.00 | 0.00 | A | 32 | 0.68 |
| 80 | 385 | 0 | 0 | 0 | 385 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 81 | 0 | 0 | 0 | 356 | 356 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 82 | 1 | 644 | 0 | 0 | 645 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 83 | 422 | 52 | 0 | 0 | 474 | 0.89 | 0.11 | 0.00 | 0.00 | A | 58 | 0.89 |
| 84 | 393 | 0 | 0 | 0 | 393 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 85 | 369 | 0 | 0 | 0 | 369 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 86 | 482 | 0 | 0 | 0 | 482 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 87 | 384 | 0 | 0 | 0 | 384 | 1.00 | 0.00 | 0.00 | 0.00 | A | 46 | 1.00 |
| 88 | 0 | 759 | 0 | 0 | 759 | 0.00 | 1.00 | 0.00 | 0.00 | T | 46 | 1.00 |
| 89 | 0 | 1027 | 0 | 2 | 1029 | 0.00 | 1.00 | 0.00 | 0.00 | T | 46 | 1.00 |
| 90 | 0 | 88 | 0 | 519 | 607 | 0.00 | 0.14 | 0.00 | 0.86 | C | 27 | 0.86 |
| 91 | 159 | 0 | 0 | 77 | 236 | 0.67 | 0.00 | 0.00 | 0.33 | A | 36 | 0.67 |
| 92 | 0 | 0 | 0 | 501 | 501 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 93 | 0 | 9 | 0 | 590 | 599 | 0.00 | 0.02 | 0.00 | 0.98 | C | 58 | 0.98 |
| 94 | 2 | 704 | 0 | 20 | 726 | 0.00 | 0.97 | 0.00 | 0.03 | T | 58 | 0.97 |
| 95 | 461 | 0 | 0 | 2 | 463 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 96 | 6 | 0 | 0 | 516 | 522 | 0.01 | 0.00 | 0.00 | 0.99 | C | 58 | 0.99 |
| 97 | 0 | 0 | 0 | 507 | 507 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 98 | 300 | 0 | 0 | 0 | 300 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 99 | 187 | 0 | 2 | 2 | 191 | 0.98 | 0.00 | 0.01 | 0.01 | A | 58 | 0.98 |
| 100 | 0 | 0 | 0 | 499 | 499 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 101 | 0 | 0 | 0 | 601 | 601 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 102 | 276 | 0 | 0 | 174 | 450 | 0.61 | 0.00 | 0.00 | 0.39 | A | 25 | 0.61 |
| 103 | 22 | 0 | 0 | 435 | 457 | 0.05 | 0.00 | 0.00 | 0.95 | C | 34 | 0.95 |
| 104 | 336 | 0 | 0 | 81 | 417 | 0.81 | 0.00 | 0.00 | 0.19 | A | 32 | 0.81 |
| 105 | 369 | 0 | 0 | 2 | 371 | 0.99 | 0.00 | 0.00 | 0.01 | A | 58 | 0.99 |
| 106 | 3 | 0 | 0 | 461 | 464 | 0.01 | 0.00 | 0.00 | 0.99 | C | 51 | 0.99 |
| 107 | 1 | 0 | 0 | 572 | 573 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 108 | 315 | 0 | 0 | 81 | 396 | 0.80 | 0.00 | 0.00 | 0.20 | A | 34 | 0.80 |
| 109 | 395 | 6 | 0 | 0 | 401 | 0.99 | 0.01 | 0.00 | 0.00 | A | 51 | 0.99 |
| 110 | 5 | 594 | 0 | 0 | 599 | 0.01 | 0.99 | 0.00 | 0.00 | T | 46 | 0.99 |
| 111 | 0 | 38 | 0 | 585 | 623 | 0.00 | 0.06 | 0.00 | 0.94 | C | 36 | 0.94 |
| 112 | 301 | 0 | 0 | 115 | 416 | 0.72 | 0.00 | 0.00 | 0.28 | A | 34 | 0.72 |
| 113 | 226 | 2 | 0 | 0 | 228 | 0.99 | 0.01 | 0.00 | 0.00 | A | 58 | 0.99 |
| 114 | 30 | 0 | 0 | 331 | 361 | 0.08 | 0.00 | 0.00 | 0.92 | C | 58 | 0.92 |
| 115 | 211 | 0 | 0 | 1 | 212 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 116 | 392 | 0 | 0 | 2 | 394 | 0.99 | 0.00 | 0.00 | 0.01 | A | 58 | 0.99 |
| 117 | 31 | 0 | 0 | 418 | 449 | 0.07 | 0.00 | 0.00 | 0.93 | C | 41 | 0.93 |
| 118 | 271 | 0 | 0 | 142 | 413 | 0.66 | 0.00 | 0.00 | 0.34 | A | 25 | 0.66 |
| 119 | 14 | 0 | 2 | 291 | 307 | 0.05 | 0.00 | 0.01 | 0.95 | C | 41 | 0.95 |
| 120 | 304 | 0 | 0 | 48 | 352 | 0.86 | 0.00 | 0.00 | 0.14 | A | 34 | 0.86 |
| 121 | 182 | 0 | 13 | 0 | 195 | 0.93 | 0.00 | 0.07 | 0.00 | A | 58 | 0.93 |
| 122 | 420 | 0 | 0 | 0 | 420 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 123 | 0 | 0 | 0 | 562 | 562 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 124 | 0 | 0 | 0 | 734 | 734 | 0.00 | 0.00 | 0.00 | 1.00 | C | 61 | 1.00 |
| 125 | 0 | 0 | 0 | 846 | 846 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 126 | 0 | 135 | 0 | 730 | 865 | 0.00 | 0.16 | 0.00 | 0.84 | C | 34 | 0.84 |
| 127 | 0 | 860 | 0 | 71 | 931 | 0.00 | 0.92 | 0.00 | 0.08 | T | 34 | 0.92 |
| 128 | 0 | 208 | 0 | 809 | 1017 | 0.00 | 0.20 | 0.00 | 0.80 | C | 34 | 0.80 |
| 129 | 0 | 0 | 0 | 805 | 805 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 130 | 0 | 0 | 0 | 745 | 745 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 131 | 1 | 0 | 0 | 649 | 650 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 132 | 316 | 0 | 0 | 90 | 406 | 0.78 | 0.00 | 0.00 | 0.22 | A | 32 | 0.78 |
| 133 | 422 | 0 | 0 | 0 | 422 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 134 | 528 | 0 | 0 | 0 | 528 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 135 | 253 | 0 | 0 | 0 | 253 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 136 | 0 | 0 | 0 | 353 | 353 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 137 | 348 | 0 | 0 | 1 | 349 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 138 | 223 | 0 | 0 | 0 | 223 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 139 | 546 | 0 | 0 | 0 | 546 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 140 | 449 | 0 | 0 | 0 | 449 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 141 | 9 | 121 | 0 | 405 | 535 | 0.02 | 0.23 | 0.00 | 0.76 | C | 32 | 0.76 |
| 142 | 2 | 717 | 0 | 2 | 721 | 0.00 | 0.99 | 0.00 | 0.00 | T | 51 | 0.99 |
| 143 | 517 | 175 | 0 | 0 | 692 | 0.75 | 0.25 | 0.00 | 0.00 | A | 32 | 0.75 |
| 144 | 495 | 0 | 16 | 2 | 513 | 0.96 | 0.00 | 0.03 | 0.00 | A | 51 | 0.96 |
| 145 | 63 | 0 | 17 | 367 | 447 | 0.14 | 0.00 | 0.04 | 0.82 | C | 58 | 0.82 |
| 146 | 392 | 0 | 25 | 2 | 419 | 0.94 | 0.00 | 0.06 | 0.00 | A | 58 | 0.94 |
| 147 | 369 | 0 | 32 | 3 | 404 | 0.91 | 0.00 | 0.08 | 0.01 | A | 58 | 0.91 |
| 148 | 1 | 0 | 0 | 575 | 576 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 149 | 0 | 0 | 0 | 762 | 762 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 150 | 0 | 0 | 0 | 686 | 686 | 0.00 | 0.00 | 0.00 | 1.00 | C | 41 | 1.00 |
| 151 | 276 | 0 | 0 | 213 | 489 | 0.56 | 0.00 | 0.00 | 0.44 | A | 25 | 0.56 |
| 152 | 0 | 0 | 0 | 401 | 401 | 0.00 | 0.00 | 0.00 | 1.00 | C | 41 | 1.00 |
| 153 | 0 | 0 | 0 | 759 | 759 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 154 | 0 | 0 | 0 | 743 | 743 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 155 | 301 | 0 | 0 | 215 | 516 | 0.58 | 0.00 | 0.00 | 0.42 | A | 25 | 0.58 |
| 156 | 1 | 0 | 0 | 602 | 603 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 157 | 0 | 0 | 0 | 742 | 742 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 158 | 1 | 0 | 0 | 368 | 369 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 159 | 306 | 0 | 0 | 102 | 408 | 0.75 | 0.00 | 0.00 | 0.25 | A | 31 | 0.75 |
| 160 | 323 | 0 | 1 | 8 | 332 | 0.97 | 0.00 | 0.00 | 0.02 | A | 58 | 0.97 |
| 161 | 1 | 0 | 0 | 526 | 527 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 162 | 0 | 32 | 0 | 720 | 752 | 0.00 | 0.04 | 0.00 | 0.96 | C | 58 | 0.96 |
| 163 | 0 | 733 | 0 | 68 | 801 | 0.00 | 0.92 | 0.00 | 0.08 | T | 51 | 0.92 |
| 164 | 0 | 65 | 0 | 685 | 750 | 0.00 | 0.09 | 0.00 | 0.91 | C | 46 | 0.91 |
| 165 | 271 | 0 | 0 | 186 | 457 | 0.59 | 0.00 | 0.00 | 0.41 | A | 25 | 0.59 |
| 166 | 21 | 0 | 0 | 422 | 443 | 0.05 | 0.00 | 0.00 | 0.95 | C | 29 | 0.95 |
| 167 | 285 | 132 | 0 | 0 | 417 | 0.68 | 0.32 | 0.00 | 0.00 | A | 31 | 0.68 |
| 168 | 18 | 684 | 0 | 0 | 702 | 0.03 | 0.97 | 0.00 | 0.00 | T | 46 | 0.97 |
| 169 | 479 | 125 | 0 | 0 | 604 | 0.79 | 0.21 | 0.00 | 0.00 | A | 34 | 0.79 |
| 170 | 442 | 0 | 0 | 0 | 442 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 171 | 359 | 0 | 0 | 3 | 362 | 0.99 | 0.00 | 0.00 | 0.01 | A | 34 | 0.99 |
| 172 | 22 | 0 | 0 | 518 | 540 | 0.04 | 0.00 | 0.00 | 0.96 | C | 41 | 0.96 |
| 173 | 386 | 0 | 0 | 263 | 649 | 0.59 | 0.00 | 0.00 | 0.41 | A | 25 | 0.59 |
| 174 | 19 | 0 | 0 | 527 | 546 | 0.03 | 0.00 | 0.00 | 0.97 | C | 41 | 0.97 |
| 175 | 270 | 0 | 0 | 28 | 298 | 0.91 | 0.00 | 0.00 | 0.09 | A | 58 | 0.91 |
| 176 | 345 | 83 | 0 | 0 | 428 | 0.81 | 0.19 | 0.00 | 0.00 | A | 34 | 0.81 |
| 177 | 32 | 499 | 0 | 0 | 531 | 0.06 | 0.94 | 0.00 | 0.00 | T | 34 | 0.94 |
| 178 | 564 | 12 | 0 | 0 | 576 | 0.98 | 0.02 | 0.00 | 0.00 | A | 58 | 0.98 |
| 179 | 363 | 0 | 0 | 95 | 458 | 0.79 | 0.00 | 0.00 | 0.21 | A | 34 | 0.79 |
| 180 | 0 | 0 | 0 | 653 | 653 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 181 | 0 | 0 | 0 | 798 | 798 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 182 | 0 | 3 | 0 | 730 | 733 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 183 | 0 | 773 | 0 | 94 | 867 | 0.00 | 0.89 | 0.00 | 0.11 | T | 58 | 0.89 |
| 184 | 0 | 83 | 0 | 700 | 783 | 0.00 | 0.11 | 0.00 | 0.89 | C | 51 | 0.89 |
| 185 | 0 | 608 | 0 | 26 | 634 | 0.00 | 0.96 | 0.00 | 0.04 | T | 51 | 0.96 |
| 186 | 478 | 12 | 0 | 0 | 490 | 0.98 | 0.02 | 0.00 | 0.00 | A | 58 | 0.98 |
| 187 | 415 | 0 | 0 | 2 | 417 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 188 | 0 | 0 | 0 | 524 | 524 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 189 | 0 | 0 | 0 | 629 | 629 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 190 | 0 | 559 | 0 | 27 | 586 | 0.00 | 0.95 | 0.00 | 0.05 | T | 58 | 0.95 |
| 191 | 488 | 14 | 0 | 0 | 502 | 0.97 | 0.03 | 0.00 | 0.00 | A | 58 | 0.97 |
| 192 | 394 | 0 | 0 | 0 | 394 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 193 | 395 | 0 | 0 | 0 | 395 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 194 | 413 | 87 | 0 | 0 | 500 | 0.83 | 0.17 | 0.00 | 0.00 | A | 34 | 0.83 |
| 195 | 0 | 822 | 0 | 0 | 822 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 196 | 2 | 1024 | 0 | 0 | 1026 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 197 | 462 | 216 | 0 | 2 | 680 | 0.68 | 0.32 | 0.00 | 0.00 | A | 34 | 0.68 |
| 198 | 10 | 0 | 0 | 477 | 487 | 0.02 | 0.00 | 0.00 | 0.98 | C | 34 | 0.98 |
| 199 | 5 | 535 | 0 | 19 | 559 | 0.01 | 0.96 | 0.00 | 0.03 | T | 58 | 0.96 |
| 200 | 498 | 13 | 0 | 0 | 511 | 0.97 | 0.03 | 0.00 | 0.00 | A | 58 | 0.97 |
| 201 | 436 | 0 | 0 | 0 | 436 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 202 | 307 | 0 | 0 | 88 | 395 | 0.78 | 0.00 | 0.00 | 0.22 | A | 34 | 0.78 |
| 203 | 1 | 0 | 0 | 502 | 503 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 204 | 0 | 0 | 0 | 724 | 724 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 205 | 0 | 142 | 0 | 646 | 788 | 0.00 | 0.18 | 0.00 | 0.82 | C | 34 | 0.82 |
| 206 | 0 | 887 | 0 | 15 | 902 | 0.00 | 0.98 | 0.00 | 0.02 | T | 58 | 0.98 |
| 207 | 0 | 1207 | 0 | 0 | 1207 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 208 | 5 | 960 | 0 | 0 | 965 | 0.01 | 0.99 | 0.00 | 0.00 | T | 46 | 0.99 |
| 209 | 440 | 213 | 0 | 0 | 653 | 0.67 | 0.33 | 0.00 | 0.00 | A | 31 | 0.67 |
| 210 | 8 | 299 | 537 | 0 | 844 | 0.01 | 0.35 | 0.64 | 0.00 | G | 24 | 0.64 |
| 211 | 0 | 510 | 238 | 0 | 748 | 0.00 | 0.68 | 0.32 | 0.00 | T | 28 | 0.68 |
| 212 | 0 | 46 | 435 | 0 | 481 | 0.00 | 0.10 | 0.90 | 0.00 | G | 25 | 0.90 |
| 213 | 352 | 0 | 314 | 0 | 666 | 0.53 | 0.00 | 0.47 | 0.00 | A | 10 | 0.53 |
| 214 | 1 | 0 | 639 | 0 | 640 | 0.00 | 0.00 | 1.00 | 0.00 | G | 25 | 1.00 |
| 215 | 0 | 0 | 803 | 0 | 803 | 0.00 | 0.00 | 1.00 | 0.00 | G | 33 | 1.00 |
| 216 | 0 | 124 | 597 | 0 | 721 | 0.00 | 0.17 | 0.83 | 0.00 | G | 24 | 0.83 |
| 217 | 0 | 598 | 0 | 0 | 598 | 0.00 | 1.00 | 0.00 | 0.00 | T | 35 | 1.00 |
| 218 | 130 | 650 | 0 | 0 | 780 | 0.17 | 0.83 | 0.00 | 0.00 | T | 25 | 0.83 |
| 219 | 490 | 0 | 0 | 0 | 490 | 1.00 | 0.00 | 0.00 | 0.00 | A | 25 | 1.00 |
| 220 | 452 | 0 | 0 | 0 | 452 | 1.00 | 0.00 | 0.00 | 0.00 | A | 30 | 1.00 |
| 221 | 0 | 981 | 0 | 0 | 981 | 0.00 | 1.00 | 0.00 | 0.00 | T | 29 | 1.00 |
| 222 | 288 | 2053 | 0 | 0 | 2341 | 0.12 | 0.88 | 0.00 | 0.00 | T | 28 | 0.88 |
| 223 | 2039 | 329 | 0 | 54 | 2422 | 0.84 | 0.14 | 0.00 | 0.02 | A | 16 | 0.84 |
| 224 | 602 | 0 | 0 | 0 | 602 | 1.00 | 0.00 | 0.00 | 0.00 | A | 16 | 1.00 |
| 225 | 0 | 23 | 0 | 0 | 23 | 0.00 | 1.00 | 0.00 | 0.00 | T | 5 | 1.00 |
Trimming thresholds :
| Raw sequence information | Values |
|---|---|
| Raw sequence length : | 225 bp |
| Mean of raw sequence Phred quality scores : | 42.3 |
| Quality report - Trimmed sequence information | Values |
|---|---|
| Trimmed sequence length : | 202 bp |
| Trimmed sequence start position : | 7 |
| Trimmed sequence end position : | 209 |
| Mean of trimmed sequence Phred quality scores : | 44.84 |
Trimming thresholds :
| Raw sequence information | Values |
|---|---|
| Raw sequence length : | 225 bp |
| Mean of raw sequence primary peak ratios : | 0.93 |
| Percentage of non-mixed positions on raw sequence : | 90.22 % |
| Mixed peak report - Trimmed sequence information | Values |
|---|---|
| Trimmed sequence length : | 220 bp |
| Trimmed sequence start position : | 6 |
| Trimmed sequence end position : | 225 |
| Mean of trimmed sequence primary peak ratios : | 0.93 |
| Percentage of non-mixed positions on trimmed sequence : | 91.36 % |
| Final trimmed sequence information | Values |
|---|---|
| Length : | 203 bp |
| Start position : | 7 |
| End position : | 209 |
| Mean of Phred quality scores : | 44.82 |
| Mean of primary peak ratio : | 0.94 |
| Percentage of non-mixed positions : | 92.12 % |
Sequence of primary peaks:
## ATTCCATACCCTCTAACCTAACTTACTAAACCCTTTAGTGAGGGTTAATTACCACCCCCCATACCACTAATTAACTAAAAATTCACCTACCAACCACAACCAATCAACAACACAAACCCCTCCCCAAAACAAAACTAACAACCCACCCACCCAACCTCACATAAACACAATAACCCTCTAACCTAAAATTACTAAACCCTTTA
Open chromatogram file in a new tab
| Position | A peak | T peak | G peak | C peak | Total | A ratio | T ratio | G ratio | C ratio | Primary base | Quality score | Primary ratio |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7 | 1645 | 0 | 0 | 0 | 1645 | 1.00 | 0.00 | 0.00 | 0.00 | A | 40 | 1.00 |
| 8 | 0 | 1830 | 0 | 0 | 1830 | 0.00 | 1.00 | 0.00 | 0.00 | T | 47 | 1.00 |
| 9 | 0 | 2646 | 0 | 0 | 2646 | 0.00 | 1.00 | 0.00 | 0.00 | T | 37 | 1.00 |
| 10 | 2 | 0 | 0 | 1543 | 1545 | 0.00 | 0.00 | 0.00 | 1.00 | C | 37 | 1.00 |
| 11 | 0 | 0 | 0 | 1309 | 1309 | 0.00 | 0.00 | 0.00 | 1.00 | C | 42 | 1.00 |
| 12 | 1139 | 0 | 0 | 0 | 1139 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 13 | 0 | 943 | 0 | 137 | 1080 | 0.00 | 0.87 | 0.00 | 0.13 | T | 24 | 0.87 |
| 14 | 1234 | 0 | 0 | 0 | 1234 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 15 | 0 | 0 | 0 | 1252 | 1252 | 0.00 | 0.00 | 0.00 | 1.00 | C | 20 | 1.00 |
| 16 | 0 | 0 | 0 | 1457 | 1457 | 0.00 | 0.00 | 0.00 | 1.00 | C | 48 | 1.00 |
| 17 | 0 | 2 | 0 | 1231 | 1233 | 0.00 | 0.00 | 0.00 | 1.00 | C | 48 | 1.00 |
| 18 | 0 | 1898 | 0 | 0 | 1898 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 19 | 0 | 0 | 0 | 1203 | 1203 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 20 | 0 | 1083 | 0 | 0 | 1083 | 0.00 | 1.00 | 0.00 | 0.00 | T | 55 | 1.00 |
| 21 | 1292 | 0 | 0 | 0 | 1292 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 22 | 1076 | 0 | 0 | 0 | 1076 | 1.00 | 0.00 | 0.00 | 0.00 | A | 26 | 1.00 |
| 23 | 0 | 0 | 0 | 787 | 787 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 24 | 0 | 1 | 0 | 1050 | 1051 | 0.00 | 0.00 | 0.00 | 1.00 | C | 57 | 1.00 |
| 25 | 0 | 1118 | 0 | 1 | 1119 | 0.00 | 1.00 | 0.00 | 0.00 | T | 50 | 1.00 |
| 26 | 1301 | 0 | 0 | 0 | 1301 | 1.00 | 0.00 | 0.00 | 0.00 | A | 23 | 1.00 |
| 27 | 695 | 0 | 0 | 0 | 695 | 1.00 | 0.00 | 0.00 | 0.00 | A | 23 | 1.00 |
| 28 | 0 | 0 | 0 | 179 | 179 | 0.00 | 0.00 | 0.00 | 1.00 | C | 13 | 1.00 |
| 29 | 0 | 1656 | 0 | 1 | 1657 | 0.00 | 1.00 | 0.00 | 0.00 | T | 25 | 1.00 |
| 30 | 0 | 2480 | 0 | 0 | 2480 | 0.00 | 1.00 | 0.00 | 0.00 | T | 50 | 1.00 |
| 31 | 1317 | 2 | 0 | 1 | 1320 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 32 | 0 | 0 | 0 | 1038 | 1038 | 0.00 | 0.00 | 0.00 | 1.00 | C | 50 | 1.00 |
| 33 | 2 | 1195 | 0 | 72 | 1269 | 0.00 | 0.94 | 0.00 | 0.06 | T | 41 | 0.94 |
| 34 | 1002 | 609 | 0 | 0 | 1611 | 0.62 | 0.38 | 0.00 | 0.00 | A | 14 | 0.62 |
| 35 | 967 | 0 | 0 | 0 | 967 | 1.00 | 0.00 | 0.00 | 0.00 | A | 26 | 1.00 |
| 36 | 509 | 0 | 0 | 0 | 509 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 37 | 0 | 0 | 0 | 1061 | 1061 | 0.00 | 0.00 | 0.00 | 1.00 | C | 26 | 1.00 |
| 38 | 71 | 0 | 0 | 777 | 848 | 0.08 | 0.00 | 0.00 | 0.92 | C | 48 | 0.92 |
| 39 | 0 | 1 | 0 | 1521 | 1522 | 0.00 | 0.00 | 0.00 | 1.00 | C | 47 | 1.00 |
| 40 | 0 | 1695 | 0 | 121 | 1816 | 0.00 | 0.93 | 0.00 | 0.07 | T | 44 | 0.93 |
| 41 | 11 | 2209 | 0 | 0 | 2220 | 0.00 | 1.00 | 0.00 | 0.00 | T | 46 | 1.00 |
| 42 | 85 | 1566 | 0 | 0 | 1651 | 0.05 | 0.95 | 0.00 | 0.00 | T | 28 | 0.95 |
| 43 | 1103 | 0 | 0 | 0 | 1103 | 1.00 | 0.00 | 0.00 | 0.00 | A | 31 | 1.00 |
| 44 | 0 | 222 | 1015 | 0 | 1237 | 0.00 | 0.18 | 0.82 | 0.00 | G | 31 | 0.82 |
| 45 | 83 | 1011 | 0 | 0 | 1094 | 0.08 | 0.92 | 0.00 | 0.00 | T | 47 | 0.92 |
| 46 | 0 | 3 | 1003 | 0 | 1006 | 0.00 | 0.00 | 1.00 | 0.00 | G | 36 | 1.00 |
| 47 | 797 | 0 | 0 | 246 | 1043 | 0.76 | 0.00 | 0.00 | 0.24 | A | 25 | 0.76 |
| 48 | 1 | 0 | 1099 | 352 | 1452 | 0.00 | 0.00 | 0.76 | 0.24 | G | 28 | 0.76 |
| 49 | 0 | 0 | 1765 | 303 | 2068 | 0.00 | 0.00 | 0.85 | 0.15 | G | 36 | 0.85 |
| 50 | 0 | 5 | 1133 | 442 | 1580 | 0.00 | 0.00 | 0.72 | 0.28 | G | 28 | 0.72 |
| 51 | 0 | 1256 | 1 | 0 | 1257 | 0.00 | 1.00 | 0.00 | 0.00 | T | 46 | 1.00 |
| 52 | 0 | 1234 | 0 | 0 | 1234 | 0.00 | 1.00 | 0.00 | 0.00 | T | 36 | 1.00 |
| 53 | 1284 | 4 | 0 | 0 | 1288 | 1.00 | 0.00 | 0.00 | 0.00 | A | 28 | 1.00 |
| 54 | 1156 | 0 | 0 | 0 | 1156 | 1.00 | 0.00 | 0.00 | 0.00 | A | 19 | 1.00 |
| 55 | 191 | 1760 | 0 | 0 | 1951 | 0.10 | 0.90 | 0.00 | 0.00 | T | 17 | 0.90 |
| 56 | 191 | 4604 | 0 | 404 | 5199 | 0.04 | 0.89 | 0.00 | 0.08 | T | 30 | 0.89 |
| 57 | 4997 | 11 | 0 | 0 | 5008 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 58 | 0 | 0 | 0 | 474 | 474 | 0.00 | 0.00 | 0.00 | 1.00 | C | 21 | 1.00 |
| 59 | 309 | 0 | 0 | 521 | 830 | 0.37 | 0.00 | 0.00 | 0.63 | C | 10 | 0.63 |
| 60 | 99 | 0 | 2 | 0 | 101 | 0.98 | 0.00 | 0.02 | 0.00 | A | 11 | 0.98 |
| 61 | 0 | 0 | 0 | 514 | 514 | 0.00 | 0.00 | 0.00 | 1.00 | C | 41 | 1.00 |
| 62 | 0 | 0 | 0 | 707 | 707 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 63 | 0 | 0 | 0 | 736 | 736 | 0.00 | 0.00 | 0.00 | 1.00 | C | 52 | 1.00 |
| 64 | 0 | 0 | 0 | 754 | 754 | 0.00 | 0.00 | 0.00 | 1.00 | C | 54 | 1.00 |
| 65 | 0 | 0 | 0 | 694 | 694 | 0.00 | 0.00 | 0.00 | 1.00 | C | 54 | 1.00 |
| 66 | 1 | 0 | 0 | 624 | 625 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 67 | 232 | 0 | 4 | 0 | 236 | 0.98 | 0.00 | 0.02 | 0.00 | A | 58 | 0.98 |
| 68 | 0 | 606 | 0 | 0 | 606 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 69 | 437 | 0 | 0 | 0 | 437 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 70 | 0 | 0 | 0 | 584 | 584 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 71 | 0 | 0 | 0 | 656 | 656 | 0.00 | 0.00 | 0.00 | 1.00 | C | 41 | 1.00 |
| 72 | 232 | 0 | 0 | 134 | 366 | 0.63 | 0.00 | 0.00 | 0.37 | A | 36 | 0.63 |
| 73 | 1 | 0 | 8 | 312 | 321 | 0.00 | 0.00 | 0.02 | 0.97 | C | 41 | 0.97 |
| 74 | 1 | 693 | 0 | 0 | 694 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 75 | 449 | 88 | 0 | 0 | 537 | 0.84 | 0.16 | 0.00 | 0.00 | A | 34 | 0.84 |
| 76 | 399 | 34 | 0 | 0 | 433 | 0.92 | 0.08 | 0.00 | 0.00 | A | 34 | 0.92 |
| 77 | 0 | 645 | 0 | 0 | 645 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 78 | 1 | 1014 | 0 | 0 | 1015 | 0.00 | 1.00 | 0.00 | 0.00 | T | 51 | 1.00 |
| 79 | 458 | 215 | 0 | 0 | 673 | 0.68 | 0.32 | 0.00 | 0.00 | A | 32 | 0.68 |
| 80 | 385 | 0 | 0 | 0 | 385 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 81 | 0 | 0 | 0 | 356 | 356 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 82 | 1 | 644 | 0 | 0 | 645 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 83 | 422 | 52 | 0 | 0 | 474 | 0.89 | 0.11 | 0.00 | 0.00 | A | 58 | 0.89 |
| 84 | 393 | 0 | 0 | 0 | 393 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 85 | 369 | 0 | 0 | 0 | 369 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 86 | 482 | 0 | 0 | 0 | 482 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 87 | 384 | 0 | 0 | 0 | 384 | 1.00 | 0.00 | 0.00 | 0.00 | A | 46 | 1.00 |
| 88 | 0 | 759 | 0 | 0 | 759 | 0.00 | 1.00 | 0.00 | 0.00 | T | 46 | 1.00 |
| 89 | 0 | 1027 | 0 | 2 | 1029 | 0.00 | 1.00 | 0.00 | 0.00 | T | 46 | 1.00 |
| 90 | 0 | 88 | 0 | 519 | 607 | 0.00 | 0.14 | 0.00 | 0.86 | C | 27 | 0.86 |
| 91 | 159 | 0 | 0 | 77 | 236 | 0.67 | 0.00 | 0.00 | 0.33 | A | 36 | 0.67 |
| 92 | 0 | 0 | 0 | 501 | 501 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 93 | 0 | 9 | 0 | 590 | 599 | 0.00 | 0.02 | 0.00 | 0.98 | C | 58 | 0.98 |
| 94 | 2 | 704 | 0 | 20 | 726 | 0.00 | 0.97 | 0.00 | 0.03 | T | 58 | 0.97 |
| 95 | 461 | 0 | 0 | 2 | 463 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 96 | 6 | 0 | 0 | 516 | 522 | 0.01 | 0.00 | 0.00 | 0.99 | C | 58 | 0.99 |
| 97 | 0 | 0 | 0 | 507 | 507 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 98 | 300 | 0 | 0 | 0 | 300 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 99 | 187 | 0 | 2 | 2 | 191 | 0.98 | 0.00 | 0.01 | 0.01 | A | 58 | 0.98 |
| 100 | 0 | 0 | 0 | 499 | 499 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 101 | 0 | 0 | 0 | 601 | 601 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 102 | 276 | 0 | 0 | 174 | 450 | 0.61 | 0.00 | 0.00 | 0.39 | A | 25 | 0.61 |
| 103 | 22 | 0 | 0 | 435 | 457 | 0.05 | 0.00 | 0.00 | 0.95 | C | 34 | 0.95 |
| 104 | 336 | 0 | 0 | 81 | 417 | 0.81 | 0.00 | 0.00 | 0.19 | A | 32 | 0.81 |
| 105 | 369 | 0 | 0 | 2 | 371 | 0.99 | 0.00 | 0.00 | 0.01 | A | 58 | 0.99 |
| 106 | 3 | 0 | 0 | 461 | 464 | 0.01 | 0.00 | 0.00 | 0.99 | C | 51 | 0.99 |
| 107 | 1 | 0 | 0 | 572 | 573 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 108 | 315 | 0 | 0 | 81 | 396 | 0.80 | 0.00 | 0.00 | 0.20 | A | 34 | 0.80 |
| 109 | 395 | 6 | 0 | 0 | 401 | 0.99 | 0.01 | 0.00 | 0.00 | A | 51 | 0.99 |
| 110 | 5 | 594 | 0 | 0 | 599 | 0.01 | 0.99 | 0.00 | 0.00 | T | 46 | 0.99 |
| 111 | 0 | 38 | 0 | 585 | 623 | 0.00 | 0.06 | 0.00 | 0.94 | C | 36 | 0.94 |
| 112 | 301 | 0 | 0 | 115 | 416 | 0.72 | 0.00 | 0.00 | 0.28 | A | 34 | 0.72 |
| 113 | 226 | 2 | 0 | 0 | 228 | 0.99 | 0.01 | 0.00 | 0.00 | A | 58 | 0.99 |
| 114 | 30 | 0 | 0 | 331 | 361 | 0.08 | 0.00 | 0.00 | 0.92 | C | 58 | 0.92 |
| 115 | 211 | 0 | 0 | 1 | 212 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 116 | 392 | 0 | 0 | 2 | 394 | 0.99 | 0.00 | 0.00 | 0.01 | A | 58 | 0.99 |
| 117 | 31 | 0 | 0 | 418 | 449 | 0.07 | 0.00 | 0.00 | 0.93 | C | 41 | 0.93 |
| 118 | 271 | 0 | 0 | 142 | 413 | 0.66 | 0.00 | 0.00 | 0.34 | A | 25 | 0.66 |
| 119 | 14 | 0 | 2 | 291 | 307 | 0.05 | 0.00 | 0.01 | 0.95 | C | 41 | 0.95 |
| 120 | 304 | 0 | 0 | 48 | 352 | 0.86 | 0.00 | 0.00 | 0.14 | A | 34 | 0.86 |
| 121 | 182 | 0 | 13 | 0 | 195 | 0.93 | 0.00 | 0.07 | 0.00 | A | 58 | 0.93 |
| 122 | 420 | 0 | 0 | 0 | 420 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 123 | 0 | 0 | 0 | 562 | 562 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 124 | 0 | 0 | 0 | 734 | 734 | 0.00 | 0.00 | 0.00 | 1.00 | C | 61 | 1.00 |
| 125 | 0 | 0 | 0 | 846 | 846 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 126 | 0 | 135 | 0 | 730 | 865 | 0.00 | 0.16 | 0.00 | 0.84 | C | 34 | 0.84 |
| 127 | 0 | 860 | 0 | 71 | 931 | 0.00 | 0.92 | 0.00 | 0.08 | T | 34 | 0.92 |
| 128 | 0 | 208 | 0 | 809 | 1017 | 0.00 | 0.20 | 0.00 | 0.80 | C | 34 | 0.80 |
| 129 | 0 | 0 | 0 | 805 | 805 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 130 | 0 | 0 | 0 | 745 | 745 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 131 | 1 | 0 | 0 | 649 | 650 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 132 | 316 | 0 | 0 | 90 | 406 | 0.78 | 0.00 | 0.00 | 0.22 | A | 32 | 0.78 |
| 133 | 422 | 0 | 0 | 0 | 422 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 134 | 528 | 0 | 0 | 0 | 528 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 135 | 253 | 0 | 0 | 0 | 253 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 136 | 0 | 0 | 0 | 353 | 353 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 137 | 348 | 0 | 0 | 1 | 349 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 138 | 223 | 0 | 0 | 0 | 223 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 139 | 546 | 0 | 0 | 0 | 546 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 140 | 449 | 0 | 0 | 0 | 449 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 141 | 9 | 121 | 0 | 405 | 535 | 0.02 | 0.23 | 0.00 | 0.76 | C | 32 | 0.76 |
| 142 | 2 | 717 | 0 | 2 | 721 | 0.00 | 0.99 | 0.00 | 0.00 | T | 51 | 0.99 |
| 143 | 517 | 175 | 0 | 0 | 692 | 0.75 | 0.25 | 0.00 | 0.00 | A | 32 | 0.75 |
| 144 | 495 | 0 | 16 | 2 | 513 | 0.96 | 0.00 | 0.03 | 0.00 | A | 51 | 0.96 |
| 145 | 63 | 0 | 17 | 367 | 447 | 0.14 | 0.00 | 0.04 | 0.82 | C | 58 | 0.82 |
| 146 | 392 | 0 | 25 | 2 | 419 | 0.94 | 0.00 | 0.06 | 0.00 | A | 58 | 0.94 |
| 147 | 369 | 0 | 32 | 3 | 404 | 0.91 | 0.00 | 0.08 | 0.01 | A | 58 | 0.91 |
| 148 | 1 | 0 | 0 | 575 | 576 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 149 | 0 | 0 | 0 | 762 | 762 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 150 | 0 | 0 | 0 | 686 | 686 | 0.00 | 0.00 | 0.00 | 1.00 | C | 41 | 1.00 |
| 151 | 276 | 0 | 0 | 213 | 489 | 0.56 | 0.00 | 0.00 | 0.44 | A | 25 | 0.56 |
| 152 | 0 | 0 | 0 | 401 | 401 | 0.00 | 0.00 | 0.00 | 1.00 | C | 41 | 1.00 |
| 153 | 0 | 0 | 0 | 759 | 759 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 154 | 0 | 0 | 0 | 743 | 743 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 155 | 301 | 0 | 0 | 215 | 516 | 0.58 | 0.00 | 0.00 | 0.42 | A | 25 | 0.58 |
| 156 | 1 | 0 | 0 | 602 | 603 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 157 | 0 | 0 | 0 | 742 | 742 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 158 | 1 | 0 | 0 | 368 | 369 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 159 | 306 | 0 | 0 | 102 | 408 | 0.75 | 0.00 | 0.00 | 0.25 | A | 31 | 0.75 |
| 160 | 323 | 0 | 1 | 8 | 332 | 0.97 | 0.00 | 0.00 | 0.02 | A | 58 | 0.97 |
| 161 | 1 | 0 | 0 | 526 | 527 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 162 | 0 | 32 | 0 | 720 | 752 | 0.00 | 0.04 | 0.00 | 0.96 | C | 58 | 0.96 |
| 163 | 0 | 733 | 0 | 68 | 801 | 0.00 | 0.92 | 0.00 | 0.08 | T | 51 | 0.92 |
| 164 | 0 | 65 | 0 | 685 | 750 | 0.00 | 0.09 | 0.00 | 0.91 | C | 46 | 0.91 |
| 165 | 271 | 0 | 0 | 186 | 457 | 0.59 | 0.00 | 0.00 | 0.41 | A | 25 | 0.59 |
| 166 | 21 | 0 | 0 | 422 | 443 | 0.05 | 0.00 | 0.00 | 0.95 | C | 29 | 0.95 |
| 167 | 285 | 132 | 0 | 0 | 417 | 0.68 | 0.32 | 0.00 | 0.00 | A | 31 | 0.68 |
| 168 | 18 | 684 | 0 | 0 | 702 | 0.03 | 0.97 | 0.00 | 0.00 | T | 46 | 0.97 |
| 169 | 479 | 125 | 0 | 0 | 604 | 0.79 | 0.21 | 0.00 | 0.00 | A | 34 | 0.79 |
| 170 | 442 | 0 | 0 | 0 | 442 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 171 | 359 | 0 | 0 | 3 | 362 | 0.99 | 0.00 | 0.00 | 0.01 | A | 34 | 0.99 |
| 172 | 22 | 0 | 0 | 518 | 540 | 0.04 | 0.00 | 0.00 | 0.96 | C | 41 | 0.96 |
| 173 | 386 | 0 | 0 | 263 | 649 | 0.59 | 0.00 | 0.00 | 0.41 | A | 25 | 0.59 |
| 174 | 19 | 0 | 0 | 527 | 546 | 0.03 | 0.00 | 0.00 | 0.97 | C | 41 | 0.97 |
| 175 | 270 | 0 | 0 | 28 | 298 | 0.91 | 0.00 | 0.00 | 0.09 | A | 58 | 0.91 |
| 176 | 345 | 83 | 0 | 0 | 428 | 0.81 | 0.19 | 0.00 | 0.00 | A | 34 | 0.81 |
| 177 | 32 | 499 | 0 | 0 | 531 | 0.06 | 0.94 | 0.00 | 0.00 | T | 34 | 0.94 |
| 178 | 564 | 12 | 0 | 0 | 576 | 0.98 | 0.02 | 0.00 | 0.00 | A | 58 | 0.98 |
| 179 | 363 | 0 | 0 | 95 | 458 | 0.79 | 0.00 | 0.00 | 0.21 | A | 34 | 0.79 |
| 180 | 0 | 0 | 0 | 653 | 653 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 181 | 0 | 0 | 0 | 798 | 798 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 182 | 0 | 3 | 0 | 730 | 733 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 183 | 0 | 773 | 0 | 94 | 867 | 0.00 | 0.89 | 0.00 | 0.11 | T | 58 | 0.89 |
| 184 | 0 | 83 | 0 | 700 | 783 | 0.00 | 0.11 | 0.00 | 0.89 | C | 51 | 0.89 |
| 185 | 0 | 608 | 0 | 26 | 634 | 0.00 | 0.96 | 0.00 | 0.04 | T | 51 | 0.96 |
| 186 | 478 | 12 | 0 | 0 | 490 | 0.98 | 0.02 | 0.00 | 0.00 | A | 58 | 0.98 |
| 187 | 415 | 0 | 0 | 2 | 417 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 188 | 0 | 0 | 0 | 524 | 524 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 189 | 0 | 0 | 0 | 629 | 629 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 190 | 0 | 559 | 0 | 27 | 586 | 0.00 | 0.95 | 0.00 | 0.05 | T | 58 | 0.95 |
| 191 | 488 | 14 | 0 | 0 | 502 | 0.97 | 0.03 | 0.00 | 0.00 | A | 58 | 0.97 |
| 192 | 394 | 0 | 0 | 0 | 394 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 193 | 395 | 0 | 0 | 0 | 395 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 194 | 413 | 87 | 0 | 0 | 500 | 0.83 | 0.17 | 0.00 | 0.00 | A | 34 | 0.83 |
| 195 | 0 | 822 | 0 | 0 | 822 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 196 | 2 | 1024 | 0 | 0 | 1026 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 197 | 462 | 216 | 0 | 2 | 680 | 0.68 | 0.32 | 0.00 | 0.00 | A | 34 | 0.68 |
| 198 | 10 | 0 | 0 | 477 | 487 | 0.02 | 0.00 | 0.00 | 0.98 | C | 34 | 0.98 |
| 199 | 5 | 535 | 0 | 19 | 559 | 0.01 | 0.96 | 0.00 | 0.03 | T | 58 | 0.96 |
| 200 | 498 | 13 | 0 | 0 | 511 | 0.97 | 0.03 | 0.00 | 0.00 | A | 58 | 0.97 |
| 201 | 436 | 0 | 0 | 0 | 436 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 202 | 307 | 0 | 0 | 88 | 395 | 0.78 | 0.00 | 0.00 | 0.22 | A | 34 | 0.78 |
| 203 | 1 | 0 | 0 | 502 | 503 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 204 | 0 | 0 | 0 | 724 | 724 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 205 | 0 | 142 | 0 | 646 | 788 | 0.00 | 0.18 | 0.00 | 0.82 | C | 34 | 0.82 |
| 206 | 0 | 887 | 0 | 15 | 902 | 0.00 | 0.98 | 0.00 | 0.02 | T | 58 | 0.98 |
| 207 | 0 | 1207 | 0 | 0 | 1207 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 208 | 5 | 960 | 0 | 0 | 965 | 0.01 | 0.99 | 0.00 | 0.00 | T | 46 | 0.99 |
| 209 | 440 | 213 | 0 | 0 | 653 | 0.67 | 0.33 | 0.00 | 0.00 | A | 31 | 0.67 |
Sequencing result #1 is aligned on both sense and antisense bisulfite converted DNA sequences to determine the sequencing direction as forward or reverse.
Warning: Trimmed sequence from the sequencing result #1 was found with insufficient length or insufficient quality and will not be used.
Trimmed sequence of primary peaks from sequencing result #1 is aligned with bisulfite converted reference DNA sense sequence
Trimmed sequence of primary peaks from sequencing result #1 is aligned with bisulfite converted reference DNA antisense sequence
Warning: Insufficient quality of trimmed sequence for direction determination.
Sequencing result #2 is aligned on both sense and antisense bisulfite converted DNA sequences to determine the sequencing direction as forward or reverse.
Trimmed sequence of primary peaks from sequencing result #2 is aligned with bisulfite converted reference DNA sense sequence
## ########################################
## # Program: Biostrings (version 2.64.0), a Bioconductor package
## # Rundate: Sat Jun 4 18:28:59 2022
## ########################################
## #=======================================
## #
## # Aligned_sequences: 2
## # 1: P1
## # 2: S1
## # Matrix: NA
## # Gap_penalty: 14.0
## # Extend_penalty: 4.0
## #
## # Length: 8
## # Identity: 8/8 (100.0%)
## # Similarity: NA/8 (NA%)
## # Gaps: 0/8 (0.0%)
## # Score: 15.85405
## #
## #
## #=======================================
##
## P1 40 GAGGGTTA 47
## ||||||||
## S1 87 GAGGGTTA 94
##
##
## #---------------------------------------
## #---------------------------------------
Trimmed sequence of primary peaks from sequencing result #2 is aligned with bisulfite converted reference DNA antisense sequence
## ########################################
## # Program: Biostrings (version 2.64.0), a Bioconductor package
## # Rundate: Sat Jun 4 18:29:00 2022
## ########################################
## #=======================================
## #
## # Aligned_sequences: 2
## # 1: P1
## # 2: S1
## # Matrix: NA
## # Gap_penalty: 14.0
## # Extend_penalty: 4.0
## #
## # Length: 146
## # Identity: 133/146 (91.1%)
## # Similarity: NA/146 (NA%)
## # Gaps: 0/146 (0.0%)
## # Score: 186.8826
## #
## #
## #=======================================
##
## P1 51 ACCACCCCCCATACCACTAA 70
## ||| |||||| |||| ||||
## S1 128 ACCGCCCCCCGTACCGCTAA 147
##
## P1 71 TTAACTAAAAATTCACCTAC 90
## ||||||||||||||||||||
## S1 148 TTAACTAAAAATTCACCTAC 167
##
## P1 91 CAACCACAACCAATCAACAA 110
## | ||||||||||||||||||
## S1 168 CGACCACAACCAATCAACAA 187
##
## P1 111 CACAAACCCCTCCCCAAAAC 130
## | | ||||||||||||||||
## S1 188 CGCGAACCCCTCCCCAAAAC 207
##
## P1 131 AAAACTAACAACCCACCCAC 150
## |||||||| |||| |||||
## S1 208 GAAACTAACGACCCGCCCAC 227
##
## P1 151 CCAACCTCACATAAACACAA 170
## || ||||| ||||||| | |
## S1 228 CCGACCTCGCATAAACGCGA 247
##
## P1 171 TAACCCTCTAACCTAAAATT 190
## ||||||||||||||||||||
## S1 248 TAACCCTCTAACCTAAAATT 267
##
## P1 191 ACTAAA 196
## ||||||
## S1 268 ACTAAA 273
##
##
## #---------------------------------------
## #---------------------------------------
Sequencing result #2 corresponds to reverse direction
To find nucleotides of reference DNA sequence positions on sequencing result, the trimmed sequence of primary peaks from forward sequencing results is aligned with bisulfite converted reference DNA sense sequence.
Warning: Insufficient length or quality of trimmed forward sequencing.
Warning: Insufficient length or quality of trimmed forward sequencing.
To find nucleotides of reference DNA sequence positions on sequencing result, the trimmed sequence of primary peaks from reverse sequencing results is aligned with bisulfite converted reference DNA antisense sequence.
## ########################################
## # Program: Biostrings (version 2.64.0), a Bioconductor package
## # Rundate: Sat Jun 4 18:29:01 2022
## ########################################
## #=======================================
## #
## # Aligned_sequences: 2
## # 1: P1
## # 2: S1
## # Matrix: NA
## # Gap_penalty: 14.0
## # Extend_penalty: 4.0
## #
## # Length: 146
## # Identity: 133/146 (91.1%)
## # Similarity: NA/146 (NA%)
## # Gaps: 0/146 (0.0%)
## # Score: 186.8826
## #
## #
## #=======================================
##
## P1 51 ACCACCCCCCATACCACTAA 70
## ||| |||||| |||| ||||
## S1 128 ACCGCCCCCCGTACCGCTAA 147
##
## P1 71 TTAACTAAAAATTCACCTAC 90
## ||||||||||||||||||||
## S1 148 TTAACTAAAAATTCACCTAC 167
##
## P1 91 CAACCACAACCAATCAACAA 110
## | ||||||||||||||||||
## S1 168 CGACCACAACCAATCAACAA 187
##
## P1 111 CACAAACCCCTCCCCAAAAC 130
## | | ||||||||||||||||
## S1 188 CGCGAACCCCTCCCCAAAAC 207
##
## P1 131 AAAACTAACAACCCACCCAC 150
## |||||||| |||| |||||
## S1 208 GAAACTAACGACCCGCCCAC 227
##
## P1 151 CCAACCTCACATAAACACAA 170
## || ||||| ||||||| | |
## S1 228 CCGACCTCGCATAAACGCGA 247
##
## P1 171 TAACCCTCTAACCTAAAATT 190
## ||||||||||||||||||||
## S1 248 TAACCCTCTAACCTAAAATT 267
##
## P1 191 ACTAAA 196
## ||||||
## S1 268 ACTAAA 273
##
##
## #---------------------------------------
## #---------------------------------------
Aligned sequence from reverse sequencing result (Pattern P1):
Length: 146 bp
## ACCACCCCCCATACCACTAATTAACTAAAAATTCACCTACCAACCACAACCAATCAACAACACAAACCCCTCCCCAAAACAAAACTAACAACCCACCCACCCAACCTCACATAAACACAATAACCCTCTAACCTAAAATTACTAAA
Aligned sequence from bisulfite converted reference DNA antisense sequence (Subject S1):
Length: 146 bp
## ACCGCCCCCCGTACCGCTAATTAACTAAAAATTCACCTACCGACCACAACCAATCAACAACGCGAACCCCTCCCCAAAACGAAACTAACGACCCGCCCACCCGACCTCGCATAAACGCGATAACCCTCTAACCTAAAATTACTAAA
| Thresholds | Values |
|---|---|
| Minimum length of the aligned sequence : | 30 bp |
| Minimum identity percentage of alignment : | 75 % |
| Minimum of bisulfite conversion rate mean : | 0.9 |
| Direction | Sequencing | Length | Identity | Mismatch | Indel in DNA reference | Indel in sequencing | Mean of conversion rates | SD of conversion rates | Quality Result |
|---|---|---|---|---|---|---|---|---|---|
| Reverse | #2 | 146 | 91.1 | 13 | 0 | 0 | 1 | 0.02 | Correct |
Forward sequencing result could have not been trimmed due to poor quality.
| Positions in trimmed sequencing result | Nucleotides in trimmed sequencing result | Positions in reference DNA sequence | Nucleotides in reference DNA sequence |
|---|---|---|---|
| 54 | A | 131 | G |
| 61 | A | 138 | G |
| 66 | A | 143 | G |
| 92 | A | 169 | G |
| 112 | A | 189 | G |
| 114 | A | 191 | G |
| 131 | A | 208 | G |
| 140 | A | 217 | G |
| 145 | A | 222 | G |
| 153 | A | 230 | G |
| 159 | A | 236 | G |
| 167 | A | 244 | G |
| 169 | A | 246 | G |
No insertions/deletions in reverse alignment.
| C number | Bisulfite conversion rate Reverse |
|---|---|
| 50 | 1.00 |
| 49 | 1.00 |
| 48 | 1.00 |
| 47 | 1.00 |
| 46 | 1.00 |
| 45 | 1.00 |
| 44 | 1.00 |
| 43 | 1.00 |
| 42 | 0.99 |
| 41 | 1.00 |
| 40 | 1.00 |
| 39 | 1.00 |
| 38 | 0.93 |
| 37 | 1.00 |
| 36 | 1.00 |
| 35 | 1.00 |
| 34 | 1.00 |
| 33 | 1.00 |
| 32 | 1.00 |
| 31 | 0.92 |
| 30 | 1.00 |
| 29 | 1.00 |
| 28 | 1.00 |
| 27 | 1.00 |
| 26 | 1.00 |
| 25 | 1.00 |
| 24 | 1.00 |
| 23 | 1.00 |
| 22 | 1.00 |
| 21 | 1.00 |
| 20 | 1.00 |
| 19 | 1.00 |
| C number | Position in reference DNA | Position in sequencing result (trimmed) | Position in sequencing result (raw) | A peak | T peak | G peak | C peak | Bisulfite conversion rate |
|---|---|---|---|---|---|---|---|---|
| 50 | 146 | 69 | 75 | 449 | 88 | 0 | 0 | 1.00 |
| 49 | 150 | 73 | 79 | 458 | 215 | 0 | 0 | 1.00 |
| 48 | 151 | 74 | 80 | 385 | 0 | 0 | 0 | 1.00 |
| 47 | 154 | 77 | 83 | 422 | 52 | 0 | 0 | 1.00 |
| 46 | 156 | 79 | 85 | 369 | 0 | 0 | 0 | 1.00 |
| 45 | 157 | 80 | 86 | 482 | 0 | 0 | 0 | 1.00 |
| 44 | 158 | 81 | 87 | 384 | 0 | 0 | 0 | 1.00 |
| 43 | 166 | 89 | 95 | 461 | 0 | 0 | 2 | 1.00 |
| 42 | 170 | 93 | 99 | 187 | 0 | 2 | 2 | 0.99 |
| 41 | 176 | 99 | 105 | 369 | 0 | 0 | 2 | 1.00 |
| 40 | 184 | 107 | 113 | 226 | 2 | 0 | 0 | 1.00 |
| 39 | 187 | 110 | 116 | 392 | 0 | 0 | 2 | 1.00 |
| 38 | 192 | 115 | 121 | 182 | 0 | 13 | 0 | 0.93 |
| 37 | 204 | 127 | 133 | 422 | 0 | 0 | 0 | 1.00 |
| 36 | 205 | 128 | 134 | 528 | 0 | 0 | 0 | 1.00 |
| 35 | 206 | 129 | 135 | 253 | 0 | 0 | 0 | 1.00 |
| 34 | 209 | 132 | 138 | 223 | 0 | 0 | 0 | 1.00 |
| 33 | 211 | 134 | 140 | 449 | 0 | 0 | 0 | 1.00 |
| 32 | 214 | 137 | 143 | 517 | 175 | 0 | 0 | 1.00 |
| 31 | 218 | 141 | 147 | 369 | 0 | 32 | 3 | 0.92 |
| 30 | 231 | 154 | 160 | 323 | 0 | 1 | 8 | 1.00 |
| 29 | 241 | 164 | 170 | 442 | 0 | 0 | 0 | 1.00 |
| 28 | 247 | 170 | 176 | 345 | 83 | 0 | 0 | 1.00 |
| 27 | 249 | 172 | 178 | 564 | 12 | 0 | 0 | 1.00 |
| 26 | 258 | 181 | 187 | 415 | 0 | 0 | 2 | 1.00 |
| 25 | 262 | 185 | 191 | 488 | 14 | 0 | 0 | 1.00 |
| 24 | 263 | 186 | 192 | 394 | 0 | 0 | 0 | 1.00 |
| 23 | 265 | 188 | 194 | 413 | 87 | 0 | 0 | 1.00 |
| 22 | 268 | 191 | 197 | 462 | 216 | 0 | 2 | 1.00 |
| 21 | 272 | 195 | 201 | 436 | 0 | 0 | 0 | 1.00 |
| 20 | 273 | 196 | 202 | 307 | 0 | 0 | 88 | 1.00 |
| 19 | 274 | 197 | 203 | 1 | 0 | 0 | 502 | 1.00 |
The maximum aligned sequence corresponds to the maximum sequence covered by at least one correct sequencing.
Length of max aligned sequence : 147 bp
Coordinates of max aligned sequence :
chr16:68771007-68771153
Maximum aligned sequence (on bisulfite converted sense sequence from the plus strand sequence) :
## TTTTAGTAATTTTAGGTTAGAGGGTTATCGCGTTTATGCGAGGTCGGGTGGGCGGGTCGTTAGTTTCGTTTTGGGGAGGGGTTCGCGTTGTTGATTGGTTGTGGTCGGTAGGTGAATTTTTAGTTAATTAGCGGTACGGGGGGCGGT
| CG number | Chromosome | Start | End | Methylation Percentage Forward | Methylation Percentage Reverse | Methylation Percentage Average | Methylation Percentage SD |
|---|---|---|---|---|---|---|---|
| 17 | chr16 | 68771150 | 68771151 | NA | 1.98 | 1.98 | NA |
| 16 | chr16 | 68771143 | 68771144 | NA | 1.69 | 1.69 | NA |
| 15 | chr16 | 68771138 | 68771139 | NA | 0.00 | 0.00 | NA |
| 14 | chr16 | 68771112 | 68771113 | NA | 0.00 | 0.00 | NA |
| 13 | chr16 | 68771092 | 68771093 | NA | 0.00 | 0.00 | NA |
| 12 | chr16 | 68771090 | 68771091 | NA | 0.00 | 0.00 | NA |
| 11 | chr16 | 68771073 | 68771074 | NA | 0.00 | 0.00 | NA |
| 10 | chr16 | 68771064 | 68771065 | NA | 6.00 | 6.00 | NA |
| 9 | chr16 | 68771059 | 68771060 | NA | 0.00 | 0.00 | NA |
| 8 | chr16 | 68771051 | 68771052 | NA | 0.00 | 0.00 | NA |
| 7 | chr16 | 68771045 | 68771046 | NA | 0.00 | 0.00 | NA |
| 6 | chr16 | 68771037 | 68771038 | NA | 0.00 | 0.00 | NA |
| 5 | chr16 | 68771035 | 68771036 | NA | 0.00 | 0.00 | NA |
Warning: No sequencing data from foward direction sequencing.
| CG number | Chromosome | Start | End | G position in reference DNA | G position in sequencing result (trimmed) | G position in sequencing result (raw) | A peak | T peak | G peak | C peak | Methylation Percentage |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 17 | chr16 | 68771150 | 68771151 | 131 | 54 | 60 | 99 | 0 | 2 | 0 | 1.98 |
| 16 | chr16 | 68771143 | 68771144 | 138 | 61 | 67 | 232 | 0 | 4 | 0 | 1.69 |
| 15 | chr16 | 68771138 | 68771139 | 143 | 66 | 72 | 232 | 0 | 0 | 134 | 0.00 |
| 14 | chr16 | 68771112 | 68771113 | 169 | 92 | 98 | 300 | 0 | 0 | 0 | 0.00 |
| 13 | chr16 | 68771092 | 68771093 | 189 | 112 | 118 | 271 | 0 | 0 | 142 | 0.00 |
| 12 | chr16 | 68771090 | 68771091 | 191 | 114 | 120 | 304 | 0 | 0 | 48 | 0.00 |
| 11 | chr16 | 68771073 | 68771074 | 208 | 131 | 137 | 348 | 0 | 0 | 1 | 0.00 |
| 10 | chr16 | 68771064 | 68771065 | 217 | 140 | 146 | 392 | 0 | 25 | 2 | 6.00 |
| 9 | chr16 | 68771059 | 68771060 | 222 | 145 | 151 | 276 | 0 | 0 | 213 | 0.00 |
| 8 | chr16 | 68771051 | 68771052 | 230 | 153 | 159 | 306 | 0 | 0 | 102 | 0.00 |
| 7 | chr16 | 68771045 | 68771046 | 236 | 159 | 165 | 271 | 0 | 0 | 186 | 0.00 |
| 6 | chr16 | 68771037 | 68771038 | 244 | 167 | 173 | 386 | 0 | 0 | 263 | 0.00 |
| 5 | chr16 | 68771035 | 68771036 | 246 | 169 | 175 | 270 | 0 | 0 | 28 | 0.00 |
CDH1_Low methylated DNA_1_aligned_DNAref_R.fasta
CDH1_Low methylated DNA_1_aligned_max_seq.fasta
CDH1_Low methylated DNA_1_chromatogram_1.pdf
CDH1_Low methylated DNA_1_bisconv_table.csv
CDH1_Low methylated DNA_1_bisconv_table.png
CDH1_Low methylated DNA_1_bisconv_table.xlsx
CDH1_Low methylated DNA_1_meth_table.csv
CDH1_Low methylated DNA_1_meth_table.png
CDH1_Low methylated DNA_1_meth_table.xlsx
CDH1_Low methylated DNA_1_QC.png
CDH1_Low methylated DNA_1_QC_table.csv
CDH1_Low methylated DNA_1_QC_table.xlsx
CDH1_Low methylated DNA_1_seqtable_1.csv
CDH1_Low methylated DNA_1_seqtable_1.xlsx
CDH1_Low methylated DNA_1_seqtable_2.csv
CDH1_Low methylated DNA_1_seqtable_2.xlsx
CDH1_Low methylated DNA_1_seqtable_trimmed_2.csv
CDH1_Low methylated DNA_1_seqtable_trimmed_2.xlsx
CDH1_Low methylated DNA_1_trimmedseq.png
| CG_nb | chromosome | start | end | meth_F | meth_R | meth_avg | meth_sd | collection | group | rep | clone | alg_coord_start | alg_coord_end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17 | chr16 | 68771150 | 68771151 | NA | 1.98 | 1.98 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 16 | chr16 | 68771143 | 68771144 | NA | 1.69 | 1.69 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 15 | chr16 | 68771138 | 68771139 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 14 | chr16 | 68771112 | 68771113 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 13 | chr16 | 68771092 | 68771093 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 12 | chr16 | 68771090 | 68771091 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 11 | chr16 | 68771073 | 68771074 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 10 | chr16 | 68771064 | 68771065 | NA | 6.00 | 6.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 9 | chr16 | 68771059 | 68771060 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 8 | chr16 | 68771051 | 68771052 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 7 | chr16 | 68771045 | 68771046 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 6 | chr16 | 68771037 | 68771038 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 | |
| 5 | chr16 | 68771035 | 68771036 | NA | 0.00 | 0.00 | NA | Low methylated DNA | 1 | NA | 68771007 | 68771153 |